Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3630 and GFF3631 overlap by 4 nucleotides GFF3631 and GFF3632 are separated by 84 nucleotides GFF3632 and GFF3633 are separated by 115 nucleotides GFF3633 and GFF3634 are separated by 140 nucleotides GFF3634 and GFF3635 are separated by 110 nucleotides
GFF3630 - ortholog of Bordetella pertussis (BX470248) BP1188, at 516,625 to 517,509
GFF3630
GFF3631 - Universal stress protein family 4, at 517,506 to 518,375
GFF3631
GFF3632 - Regulator of nucleoside diphosphate kinase, at 518,460 to 518,861
GFF3632
GFF3633 - hypothetical protein, at 518,977 to 519,102
GFF3633
GFF3634 - hypothetical protein, at 519,243 to 519,449
GFF3634
GFF3635 - Nitrogen regulation protein NR(I), at 519,560 to 520,990
GFF3635
Position (kb) 518
519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 517.700 kb on - strand, within GFF3631 at 517.978 kb on + strand, within GFF3631 at 517.979 kb on - strand, within GFF3631 at 518.059 kb on + strand, within GFF3631 at 518.060 kb on - strand, within GFF3631 at 518.461 kb on + strand at 518.462 kb on - strand at 518.462 kb on - strand at 518.641 kb on + strand, within GFF3632 at 518.642 kb on - strand, within GFF3632 at 518.701 kb on + strand, within GFF3632 at 518.701 kb on + strand, within GFF3632 at 518.702 kb on - strand, within GFF3632 at 518.702 kb on - strand, within GFF3632 at 518.935 kb on + strand at 518.935 kb on + strand at 518.936 kb on - strand at 518.936 kb on - strand at 518.936 kb on - strand at 518.936 kb on - strand at 518.979 kb on - strand at 518.979 kb on - strand at 518.979 kb on - strand at 518.979 kb on - strand at 519.109 kb on + strand at 519.109 kb on + strand at 519.110 kb on - strand at 519.110 kb on - strand at 519.851 kb on + strand, within GFF3635 at 519.851 kb on + strand, within GFF3635
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 517,700 - GFF3631 0.22 -0.3 517,978 + GFF3631 0.54 -0.2 517,979 - GFF3631 0.54 -0.2 518,059 + GFF3631 0.64 -0.9 518,060 - GFF3631 0.64 -0.4 518,461 + -0.8 518,462 - +0.2 518,462 - +0.9 518,641 + GFF3632 0.45 -0.8 518,642 - GFF3632 0.45 -0.6 518,701 + GFF3632 0.60 +0.1 518,701 + GFF3632 0.60 -1.1 518,702 - GFF3632 0.60 -0.3 518,702 - GFF3632 0.60 -0.7 518,935 + +0.9 518,935 + -0.1 518,936 - +0.1 518,936 - -0.1 518,936 - -1.6 518,936 - +0.3 518,979 - -1.9 518,979 - -0.6 518,979 - -0.3 518,979 - -0.4 519,109 + +0.2 519,109 + -0.6 519,110 - +1.9 519,110 - +0.1 519,851 + GFF3635 0.20 -0.6 519,851 + GFF3635 0.20 -0.2
Or see this region's nucleotide sequence