Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3589 and GFF3590 are separated by 61 nucleotides GFF3590 and GFF3591 are separated by 127 nucleotides GFF3591 and GFF3592 are separated by 12 nucleotides
GFF3589 - Histidine ammonia-lyase (EC 4.3.1.3), at 475,855 to 477,360
GFF3589
GFF3590 - Urocanate hydratase (EC 4.2.1.49), at 477,422 to 479,119
GFF3590
GFF3591 - Histidine utilization repressor, at 479,247 to 479,963
GFF3591
GFF3592 - Transcriptional regulator protein, at 479,976 to 480,776
GFF3592
Position (kb) 477
478
479
480 Strain fitness (log2 ratio) -2
-1
0
1
2 at 477.600 kb on + strand, within GFF3590 at 477.601 kb on - strand, within GFF3590 at 478.047 kb on + strand, within GFF3590 at 478.048 kb on - strand, within GFF3590 at 478.125 kb on + strand, within GFF3590 at 478.125 kb on + strand, within GFF3590 at 478.695 kb on + strand, within GFF3590 at 478.695 kb on + strand, within GFF3590 at 478.695 kb on + strand, within GFF3590 at 478.695 kb on + strand, within GFF3590 at 478.695 kb on + strand, within GFF3590 at 478.695 kb on + strand, within GFF3590 at 478.695 kb on - strand, within GFF3590 at 478.696 kb on - strand, within GFF3590 at 478.696 kb on - strand, within GFF3590 at 478.696 kb on - strand, within GFF3590 at 478.696 kb on - strand, within GFF3590 at 478.696 kb on - strand, within GFF3590 at 478.725 kb on + strand, within GFF3590 at 478.725 kb on + strand, within GFF3590 at 478.725 kb on + strand, within GFF3590 at 478.725 kb on + strand, within GFF3590 at 478.726 kb on - strand, within GFF3590 at 478.956 kb on + strand at 478.956 kb on + strand at 479.019 kb on + strand at 479.154 kb on + strand at 479.154 kb on + strand at 479.159 kb on - strand at 479.174 kb on - strand at 479.195 kb on + strand at 479.195 kb on + strand at 479.237 kb on + strand at 479.246 kb on + strand at 479.246 kb on + strand at 479.246 kb on + strand at 479.247 kb on - strand at 479.247 kb on - strand at 479.283 kb on + strand at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.484 kb on + strand, within GFF3591 at 479.485 kb on - strand, within GFF3591 at 479.718 kb on + strand, within GFF3591 at 479.719 kb on - strand, within GFF3591 at 479.719 kb on - strand, within GFF3591 at 479.719 kb on - strand, within GFF3591 at 479.758 kb on - strand, within GFF3591 at 480.001 kb on + strand at 480.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 477,600 + GFF3590 0.10 +0.4 477,601 - GFF3590 0.11 -0.9 478,047 + GFF3590 0.37 -0.4 478,048 - GFF3590 0.37 -0.1 478,125 + GFF3590 0.41 -0.7 478,125 + GFF3590 0.41 -0.9 478,695 + GFF3590 0.75 +0.2 478,695 + GFF3590 0.75 -0.6 478,695 + GFF3590 0.75 +1.1 478,695 + GFF3590 0.75 +0.9 478,695 + GFF3590 0.75 -0.3 478,695 + GFF3590 0.75 +0.7 478,695 - GFF3590 0.75 -0.1 478,696 - GFF3590 0.75 -0.1 478,696 - GFF3590 0.75 +0.9 478,696 - GFF3590 0.75 -0.4 478,696 - GFF3590 0.75 -0.2 478,696 - GFF3590 0.75 -0.2 478,725 + GFF3590 0.77 -0.3 478,725 + GFF3590 0.77 -1.1 478,725 + GFF3590 0.77 -1.1 478,725 + GFF3590 0.77 -1.2 478,726 - GFF3590 0.77 +0.9 478,956 + +0.7 478,956 + -0.5 479,019 + -0.4 479,154 + -1.4 479,154 + +0.2 479,159 - +0.2 479,174 - -0.7 479,195 + +0.2 479,195 + +0.1 479,237 + -0.2 479,246 + -0.1 479,246 + +0.7 479,246 + -0.2 479,247 - +0.9 479,247 - +1.4 479,283 + -0.8 479,466 + GFF3591 0.31 -0.2 479,466 + GFF3591 0.31 +0.7 479,466 + GFF3591 0.31 -0.6 479,466 + GFF3591 0.31 +0.1 479,466 + GFF3591 0.31 -0.1 479,466 + GFF3591 0.31 +1.9 479,467 - GFF3591 0.31 +0.1 479,467 - GFF3591 0.31 -0.4 479,467 - GFF3591 0.31 +0.5 479,467 - GFF3591 0.31 +0.5 479,467 - GFF3591 0.31 +0.0 479,467 - GFF3591 0.31 -2.1 479,467 - GFF3591 0.31 +0.6 479,484 + GFF3591 0.33 +0.1 479,485 - GFF3591 0.33 -0.5 479,718 + GFF3591 0.66 -0.6 479,719 - GFF3591 0.66 +0.9 479,719 - GFF3591 0.66 -0.5 479,719 - GFF3591 0.66 -0.4 479,758 - GFF3591 0.71 -0.6 480,001 + +1.4 480,002 - -1.4
Or see this region's nucleotide sequence