Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3460 and GFF3461 are separated by 38 nucleotides GFF3461 and GFF3462 are separated by 0 nucleotides GFF3462 and GFF3463 are separated by 157 nucleotides
GFF3460 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 339,909 to 341,573
GFF3460
GFF3461 - Electron transfer flavoprotein, beta subunit, at 341,612 to 342,385
GFF3461
GFF3462 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 342,386 to 344,167
GFF3462
GFF3463 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 344,325 to 345,026
GFF3463
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -1
0
1 at 341.539 kb on + strand at 341.540 kb on - strand at 341.540 kb on - strand at 341.563 kb on + strand at 341.564 kb on - strand at 341.649 kb on - strand at 341.808 kb on + strand, within GFF3461 at 342.086 kb on + strand, within GFF3461 at 342.481 kb on - strand at 342.864 kb on + strand, within GFF3462 at 342.865 kb on - strand, within GFF3462 at 342.865 kb on - strand, within GFF3462 at 342.865 kb on - strand, within GFF3462 at 343.216 kb on - strand, within GFF3462 at 343.470 kb on + strand, within GFF3462 at 344.025 kb on + strand at 344.058 kb on - strand at 344.157 kb on + strand at 344.173 kb on - strand at 344.213 kb on + strand at 344.213 kb on + strand at 344.214 kb on - strand at 344.214 kb on - strand at 344.214 kb on - strand at 344.214 kb on - strand at 344.239 kb on - strand at 344.305 kb on + strand at 344.507 kb on + strand, within GFF3463 at 344.507 kb on + strand, within GFF3463 at 344.508 kb on - strand, within GFF3463 at 344.508 kb on - strand, within GFF3463 at 344.669 kb on + strand, within GFF3463 at 344.669 kb on + strand, within GFF3463 at 344.812 kb on - strand, within GFF3463 at 344.855 kb on + strand, within GFF3463 at 345.050 kb on + strand at 345.051 kb on - strand at 345.082 kb on - strand at 345.140 kb on + strand at 345.140 kb on + strand at 345.141 kb on - strand at 345.141 kb on - strand at 345.144 kb on - strand at 345.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 341,539 + +0.7 341,540 - +0.8 341,540 - +0.4 341,563 + -0.0 341,564 - -0.6 341,649 - +0.7 341,808 + GFF3461 0.25 +0.0 342,086 + GFF3461 0.61 +0.6 342,481 - +0.9 342,864 + GFF3462 0.27 -0.1 342,865 - GFF3462 0.27 +0.1 342,865 - GFF3462 0.27 +0.6 342,865 - GFF3462 0.27 -0.0 343,216 - GFF3462 0.47 -0.8 343,470 + GFF3462 0.61 +0.2 344,025 + -0.4 344,058 - -0.2 344,157 + +0.2 344,173 - +0.1 344,213 + +0.2 344,213 + -0.0 344,214 - -0.0 344,214 - +0.0 344,214 - +0.1 344,214 - +0.5 344,239 - -0.0 344,305 + -0.6 344,507 + GFF3463 0.26 -0.2 344,507 + GFF3463 0.26 +0.0 344,508 - GFF3463 0.26 -0.0 344,508 - GFF3463 0.26 +0.4 344,669 + GFF3463 0.49 -0.4 344,669 + GFF3463 0.49 -1.0 344,812 - GFF3463 0.69 +0.7 344,855 + GFF3463 0.75 +0.2 345,050 + -0.6 345,051 - -1.6 345,082 - +1.0 345,140 + -0.1 345,140 + +0.7 345,141 - -0.5 345,141 - -1.3 345,144 - -0.6 345,144 - -0.9
Or see this region's nucleotide sequence