Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3455 and GFF3456 are separated by 244 nucleotides GFF3456 and GFF3457 are separated by 119 nucleotides GFF3457 and GFF3458 are separated by 45 nucleotides GFF3458 and GFF3459 overlap by 89 nucleotides
GFF3455 - Type IV secretion system protein VirD4, at 335,424 to 337,445
GFF3455
GFF3456 - Probable lipoprotein, at 337,690 to 337,836
GFF3456
GFF3457 - Transcriptional regulator, LysR family, at 337,956 to 338,888
GFF3457
GFF3458 - Electron transfer flavoprotein, alpha subunit, at 338,934 to 339,878
GFF3458
GFF3459 - hypothetical protein, at 339,790 to 339,912
GFF3459
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 337.019 kb on - strand, within GFF3455 at 337.112 kb on - strand, within GFF3455 at 337.231 kb on + strand, within GFF3455 at 337.276 kb on + strand at 337.531 kb on - strand at 337.532 kb on + strand at 337.532 kb on + strand at 337.620 kb on + strand at 337.721 kb on + strand, within GFF3456 at 337.780 kb on + strand, within GFF3456 at 337.780 kb on + strand, within GFF3456 at 337.781 kb on - strand, within GFF3456 at 337.781 kb on - strand, within GFF3456 at 338.244 kb on - strand, within GFF3457 at 338.397 kb on - strand, within GFF3457 at 338.467 kb on + strand, within GFF3457 at 338.516 kb on - strand, within GFF3457 at 338.523 kb on + strand, within GFF3457 at 338.523 kb on + strand, within GFF3457 at 338.936 kb on - strand at 338.936 kb on - strand at 339.335 kb on - strand, within GFF3458 at 339.481 kb on + strand, within GFF3458 at 339.482 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.791 kb on + strand at 339.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 337,019 - GFF3455 0.79 -0.0 337,112 - GFF3455 0.83 -0.2 337,231 + GFF3455 0.89 +0.7 337,276 + +0.8 337,531 - +0.3 337,532 + -0.1 337,532 + -1.9 337,620 + +0.0 337,721 + GFF3456 0.21 +0.1 337,780 + GFF3456 0.61 +0.2 337,780 + GFF3456 0.61 -0.4 337,781 - GFF3456 0.62 -0.5 337,781 - GFF3456 0.62 +0.5 338,244 - GFF3457 0.31 +0.5 338,397 - GFF3457 0.47 +0.2 338,467 + GFF3457 0.55 -0.2 338,516 - GFF3457 0.60 +0.8 338,523 + GFF3457 0.61 +2.5 338,523 + GFF3457 0.61 +0.6 338,936 - -0.2 338,936 - +0.2 339,335 - GFF3458 0.42 +0.5 339,481 + GFF3458 0.58 +1.0 339,482 - GFF3458 0.58 +1.0 339,769 - GFF3458 0.88 +0.1 339,769 - GFF3458 0.88 -0.7 339,769 - GFF3458 0.88 -1.4 339,769 - GFF3458 0.88 -0.3 339,769 - GFF3458 0.88 +0.5 339,791 + +0.1 339,792 - +1.0
Or see this region's nucleotide sequence