Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3403 and GFF3404 overlap by 1 nucleotides GFF3404 and GFF3405 are separated by 2 nucleotides GFF3405 and GFF3406 are separated by 31 nucleotides
GFF3403 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 288,461 to 289,504
GFF3403
GFF3404 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 289,504 to 290,655
GFF3404
GFF3405 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 290,658 to 291,488
GFF3405
GFF3406 - MaoC family protein, at 291,520 to 291,927
GFF3406
Position (kb) 289
290
291 Strain fitness (log2 ratio) -1
0
1 at 288.766 kb on - strand, within GFF3403 at 288.820 kb on - strand, within GFF3403 at 289.167 kb on + strand, within GFF3403 at 289.560 kb on - strand at 289.560 kb on - strand at 289.560 kb on - strand at 289.617 kb on - strand at 289.694 kb on + strand, within GFF3404 at 289.694 kb on + strand, within GFF3404 at 289.853 kb on + strand, within GFF3404 at 289.853 kb on + strand, within GFF3404 at 289.854 kb on - strand, within GFF3404 at 289.923 kb on - strand, within GFF3404 at 290.358 kb on - strand, within GFF3404 at 290.435 kb on + strand, within GFF3404 at 290.462 kb on + strand, within GFF3404 at 290.462 kb on + strand, within GFF3404 at 290.463 kb on - strand, within GFF3404 at 290.708 kb on - strand at 290.735 kb on - strand at 290.735 kb on - strand at 290.735 kb on - strand at 291.209 kb on - strand, within GFF3405
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 288,766 - GFF3403 0.29 -0.2 288,820 - GFF3403 0.34 -0.6 289,167 + GFF3403 0.68 +0.3 289,560 - -0.2 289,560 - -0.0 289,560 - +0.2 289,617 - -0.2 289,694 + GFF3404 0.16 +0.1 289,694 + GFF3404 0.16 +1.0 289,853 + GFF3404 0.30 -0.7 289,853 + GFF3404 0.30 -0.0 289,854 - GFF3404 0.30 -0.6 289,923 - GFF3404 0.36 +1.1 290,358 - GFF3404 0.74 -1.4 290,435 + GFF3404 0.81 -0.3 290,462 + GFF3404 0.83 -0.1 290,462 + GFF3404 0.83 -0.9 290,463 - GFF3404 0.83 -1.0 290,708 - +0.0 290,735 - +0.2 290,735 - -0.2 290,735 - +0.4 291,209 - GFF3405 0.66 +0.5
Or see this region's nucleotide sequence