Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3316 and GFF3317 are separated by 139 nucleotides GFF3317 and GFF3318 are separated by 81 nucleotides
GFF3316 - XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase), at 202,502 to 203,353
GFF3316
GFF3317 - conserved hypothetical membrane protein, paralogue of Y20848, at 203,493 to 204,689
GFF3317
GFF3318 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 204,771 to 205,877
GFF3318
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 202.527 kb on + strand at 202.528 kb on - strand at 203.004 kb on - strand, within GFF3316 at 203.004 kb on - strand, within GFF3316 at 203.004 kb on - strand, within GFF3316 at 203.502 kb on + strand at 203.502 kb on + strand at 203.503 kb on - strand at 203.503 kb on - strand at 203.503 kb on - strand at 203.576 kb on + strand at 203.682 kb on + strand, within GFF3317 at 203.683 kb on - strand, within GFF3317 at 203.683 kb on - strand, within GFF3317 at 203.742 kb on + strand, within GFF3317 at 203.754 kb on + strand, within GFF3317 at 203.754 kb on + strand, within GFF3317 at 203.754 kb on + strand, within GFF3317 at 203.754 kb on + strand, within GFF3317 at 203.754 kb on + strand, within GFF3317 at 203.755 kb on - strand, within GFF3317 at 203.755 kb on - strand, within GFF3317 at 203.755 kb on - strand, within GFF3317 at 203.796 kb on + strand, within GFF3317 at 203.817 kb on + strand, within GFF3317 at 204.189 kb on + strand, within GFF3317 at 204.189 kb on + strand, within GFF3317 at 204.190 kb on - strand, within GFF3317 at 204.190 kb on - strand, within GFF3317 at 204.190 kb on - strand, within GFF3317 at 204.232 kb on - strand, within GFF3317 at 204.243 kb on + strand, within GFF3317 at 204.255 kb on + strand, within GFF3317 at 204.255 kb on + strand, within GFF3317 at 204.256 kb on - strand, within GFF3317 at 204.363 kb on + strand, within GFF3317 at 204.363 kb on + strand, within GFF3317 at 204.363 kb on + strand, within GFF3317 at 204.456 kb on + strand, within GFF3317 at 204.457 kb on - strand, within GFF3317 at 204.457 kb on - strand, within GFF3317 at 204.457 kb on - strand, within GFF3317 at 204.576 kb on + strand at 204.576 kb on + strand at 204.576 kb on + strand at 204.576 kb on + strand at 204.715 kb on + strand at 204.716 kb on - strand at 204.716 kb on - strand at 204.900 kb on + strand, within GFF3318 at 204.901 kb on - strand, within GFF3318 at 204.903 kb on + strand, within GFF3318 at 204.904 kb on - strand, within GFF3318 at 204.904 kb on - strand, within GFF3318 at 204.904 kb on - strand, within GFF3318 at 205.032 kb on + strand, within GFF3318 at 205.032 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.174 kb on - strand, within GFF3318 at 205.174 kb on - strand, within GFF3318 at 205.200 kb on + strand, within GFF3318 at 205.201 kb on - strand, within GFF3318 at 205.266 kb on + strand, within GFF3318 at 205.267 kb on - strand, within GFF3318 at 205.267 kb on - strand, within GFF3318 at 205.542 kb on + strand, within GFF3318 at 205.542 kb on + strand, within GFF3318 at 205.542 kb on + strand, within GFF3318 at 205.543 kb on - strand, within GFF3318 at 205.543 kb on - strand, within GFF3318
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 202,527 + +0.0 202,528 - -0.6 203,004 - GFF3316 0.59 -0.2 203,004 - GFF3316 0.59 -0.6 203,004 - GFF3316 0.59 -0.3 203,502 + -0.8 203,502 + +0.1 203,503 - -0.1 203,503 - +0.5 203,503 - -2.4 203,576 + -0.2 203,682 + GFF3317 0.16 -0.4 203,683 - GFF3317 0.16 +0.1 203,683 - GFF3317 0.16 -0.1 203,742 + GFF3317 0.21 -0.5 203,754 + GFF3317 0.22 -0.1 203,754 + GFF3317 0.22 -1.0 203,754 + GFF3317 0.22 +0.0 203,754 + GFF3317 0.22 -2.1 203,754 + GFF3317 0.22 -0.6 203,755 - GFF3317 0.22 +0.7 203,755 - GFF3317 0.22 -0.4 203,755 - GFF3317 0.22 +0.7 203,796 + GFF3317 0.25 +0.3 203,817 + GFF3317 0.27 -1.4 204,189 + GFF3317 0.58 -1.3 204,189 + GFF3317 0.58 -1.4 204,190 - GFF3317 0.58 -0.9 204,190 - GFF3317 0.58 +0.9 204,190 - GFF3317 0.58 -0.3 204,232 - GFF3317 0.62 +1.3 204,243 + GFF3317 0.63 -0.2 204,255 + GFF3317 0.64 -0.8 204,255 + GFF3317 0.64 +0.1 204,256 - GFF3317 0.64 -0.8 204,363 + GFF3317 0.73 -0.2 204,363 + GFF3317 0.73 +0.7 204,363 + GFF3317 0.73 +0.6 204,456 + GFF3317 0.80 +0.1 204,457 - GFF3317 0.81 +0.3 204,457 - GFF3317 0.81 +0.5 204,457 - GFF3317 0.81 -1.1 204,576 + +0.2 204,576 + -0.0 204,576 + +0.1 204,576 + -0.8 204,715 + -0.1 204,716 - -1.7 204,716 - +0.2 204,900 + GFF3318 0.12 -0.4 204,901 - GFF3318 0.12 -0.1 204,903 + GFF3318 0.12 -0.7 204,904 - GFF3318 0.12 -0.3 204,904 - GFF3318 0.12 +0.0 204,904 - GFF3318 0.12 -0.2 205,032 + GFF3318 0.24 +0.5 205,032 + GFF3318 0.24 -0.2 205,173 + GFF3318 0.36 +0.1 205,173 + GFF3318 0.36 -0.3 205,173 + GFF3318 0.36 -0.2 205,173 + GFF3318 0.36 -0.6 205,174 - GFF3318 0.36 +0.3 205,174 - GFF3318 0.36 +0.4 205,200 + GFF3318 0.39 +0.6 205,201 - GFF3318 0.39 +0.4 205,266 + GFF3318 0.45 +1.9 205,267 - GFF3318 0.45 -0.8 205,267 - GFF3318 0.45 -0.1 205,542 + GFF3318 0.70 -0.6 205,542 + GFF3318 0.70 -2.5 205,542 + GFF3318 0.70 -1.4 205,543 - GFF3318 0.70 +0.0 205,543 - GFF3318 0.70 -0.0
Or see this region's nucleotide sequence