Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3298 and GFF3299 overlap by 15 nucleotides GFF3299 and GFF3300 are separated by 41 nucleotides GFF3300 and GFF3301 are separated by 382 nucleotides GFF3301 and GFF3302 are separated by 11 nucleotides
GFF3298 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 182,804 to 183,838
GFF3298
GFF3299 - hypothetical protein, at 183,824 to 184,078
GFF3299
GFF3300 - Putative Rieske (2Fe-2S) family oxidoreductase, large subunit, at 184,120 to 185,139
GFF3300
GFF3301 - Cytosine deaminase (EC 3.5.4.1), at 185,522 to 185,983
GFF3301
GFF3302 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 185,995 to 186,762
GFF3302
Position (kb) 184
185
186 Strain fitness (log2 ratio) -1
0
1 at 183.264 kb on + strand, within GFF3298 at 183.495 kb on + strand, within GFF3298 at 183.495 kb on + strand, within GFF3298 at 183.496 kb on - strand, within GFF3298 at 183.504 kb on + strand, within GFF3298 at 183.504 kb on + strand, within GFF3298 at 183.667 kb on - strand, within GFF3298 at 183.667 kb on - strand, within GFF3298 at 183.903 kb on + strand, within GFF3299 at 183.904 kb on - strand, within GFF3299 at 183.904 kb on - strand, within GFF3299 at 183.904 kb on - strand, within GFF3299 at 183.904 kb on - strand, within GFF3299 at 183.956 kb on - strand, within GFF3299 at 184.033 kb on - strand, within GFF3299 at 184.099 kb on + strand at 184.436 kb on - strand, within GFF3300 at 184.459 kb on + strand, within GFF3300 at 184.666 kb on + strand, within GFF3300 at 184.793 kb on - strand, within GFF3300 at 184.795 kb on + strand, within GFF3300 at 185.794 kb on - strand, within GFF3301 at 185.805 kb on + strand, within GFF3301 at 186.062 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 183,264 + GFF3298 0.44 -1.3 183,495 + GFF3298 0.67 -0.1 183,495 + GFF3298 0.67 +0.8 183,496 - GFF3298 0.67 +0.5 183,504 + GFF3298 0.68 -0.2 183,504 + GFF3298 0.68 -0.7 183,667 - GFF3298 0.83 +0.3 183,667 - GFF3298 0.83 -0.9 183,903 + GFF3299 0.31 -0.2 183,904 - GFF3299 0.31 +0.2 183,904 - GFF3299 0.31 -0.3 183,904 - GFF3299 0.31 -0.1 183,904 - GFF3299 0.31 -0.7 183,956 - GFF3299 0.52 +0.7 184,033 - GFF3299 0.82 -0.1 184,099 + -0.7 184,436 - GFF3300 0.31 +1.3 184,459 + GFF3300 0.33 +0.6 184,666 + GFF3300 0.54 +0.2 184,793 - GFF3300 0.66 +0.1 184,795 + GFF3300 0.66 -0.1 185,794 - GFF3301 0.59 +0.3 185,805 + GFF3301 0.61 +0.0 186,062 + +0.6
Or see this region's nucleotide sequence