Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF316 and GFF317 are separated by 90 nucleotides GFF317 and GFF318 are separated by 8 nucleotides GFF318 and GFF319 are separated by 9 nucleotides GFF319 and GFF320 overlap by 4 nucleotides GFF320 and GFF321 are separated by 688 nucleotides
GFF316 - Mercuric resistance operon regulatory protein, at 340,266 to 340,676
GFF316
GFF317 - Mercuric transport protein, MerT, at 340,767 to 341,123
GFF317
GFF318 - hypothetical protein, at 341,132 to 341,263
GFF318
GFF319 - Periplasmic mercury(+2) binding protein, at 341,273 to 341,563
GFF319
GFF320 - Mercuric ion reductase (EC 1.16.1.1), at 341,560 to 343,230
GFF320
GFF321 - hypothetical protein, at 343,919 to 344,038
GFF321
Position (kb) 341
342
343
344 Strain fitness (log2 ratio) -1
0
1 at 340.691 kb on - strand at 340.721 kb on + strand at 340.721 kb on + strand at 340.721 kb on + strand at 340.721 kb on + strand at 340.766 kb on + strand at 340.855 kb on + strand, within GFF317 at 340.855 kb on + strand, within GFF317 at 340.856 kb on - strand, within GFF317 at 340.974 kb on + strand, within GFF317 at 341.095 kb on - strand at 341.095 kb on - strand at 341.100 kb on + strand at 341.100 kb on + strand at 341.100 kb on + strand at 341.101 kb on - strand at 341.101 kb on - strand at 341.101 kb on - strand at 341.101 kb on - strand at 341.192 kb on + strand, within GFF318 at 341.209 kb on + strand, within GFF318 at 341.209 kb on + strand, within GFF318 at 341.210 kb on - strand, within GFF318 at 341.258 kb on + strand at 341.258 kb on + strand at 341.259 kb on - strand at 341.259 kb on - strand at 341.259 kb on - strand at 341.261 kb on + strand at 341.290 kb on + strand at 341.343 kb on + strand, within GFF319 at 342.115 kb on + strand, within GFF320 at 342.124 kb on + strand, within GFF320 at 342.124 kb on + strand, within GFF320 at 342.125 kb on - strand, within GFF320 at 342.286 kb on - strand, within GFF320 at 342.313 kb on + strand, within GFF320 at 342.772 kb on + strand, within GFF320 at 342.772 kb on + strand, within GFF320 at 342.779 kb on - strand, within GFF320 at 342.966 kb on - strand, within GFF320 at 343.382 kb on - strand at 343.391 kb on + strand at 343.392 kb on - strand at 343.518 kb on - strand at 343.528 kb on - strand at 343.552 kb on + strand at 343.552 kb on + strand at 343.553 kb on - strand at 343.620 kb on - strand at 343.620 kb on - strand at 343.620 kb on - strand at 343.620 kb on - strand at 343.707 kb on - strand at 343.754 kb on + strand at 343.798 kb on + strand at 343.868 kb on - strand at 344.156 kb on + strand at 344.157 kb on - strand at 344.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 340,691 - +0.3 340,721 + +0.6 340,721 + +0.7 340,721 + -0.4 340,721 + +0.3 340,766 + +0.6 340,855 + GFF317 0.25 +0.4 340,855 + GFF317 0.25 +0.2 340,856 - GFF317 0.25 -1.0 340,974 + GFF317 0.58 +1.1 341,095 - +0.2 341,095 - +0.1 341,100 + -0.8 341,100 + +0.1 341,100 + -0.2 341,101 - +0.4 341,101 - -0.2 341,101 - -0.9 341,101 - +1.0 341,192 + GFF318 0.45 -0.2 341,209 + GFF318 0.58 -0.3 341,209 + GFF318 0.58 +0.6 341,210 - GFF318 0.59 +0.1 341,258 + -0.2 341,258 + -0.0 341,259 - -1.2 341,259 - +0.1 341,259 - +0.0 341,261 + -0.8 341,290 + -0.2 341,343 + GFF319 0.24 -0.7 342,115 + GFF320 0.33 +0.6 342,124 + GFF320 0.34 +0.8 342,124 + GFF320 0.34 -0.0 342,125 - GFF320 0.34 +0.5 342,286 - GFF320 0.43 -0.4 342,313 + GFF320 0.45 +1.1 342,772 + GFF320 0.73 -0.5 342,772 + GFF320 0.73 +0.2 342,779 - GFF320 0.73 -0.3 342,966 - GFF320 0.84 -0.5 343,382 - -0.6 343,391 + +1.0 343,392 - -0.6 343,518 - -0.4 343,528 - -0.1 343,552 + -0.1 343,552 + -1.0 343,553 - +0.6 343,620 - -0.4 343,620 - -0.4 343,620 - +0.1 343,620 - -0.9 343,707 - +0.4 343,754 + -0.4 343,798 + +0.1 343,868 - -0.5 344,156 + +0.4 344,157 - +1.2 344,214 - -0.8
Or see this region's nucleotide sequence