Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3168

Experiment: Ying_AminoAcid20 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3167 and GFF3168 are separated by 62 nucleotidesGFF3168 and GFF3169 are separated by 89 nucleotidesGFF3169 and GFF3170 are separated by 72 nucleotides GFF3167 - FIG00575819: hypothetical protein, at 44,884 to 46,524 GFF3167 GFF3168 - hypothetical protein, at 46,587 to 46,838 GFF3168 GFF3169 - hypothetical protein, at 46,928 to 47,176 GFF3169 GFF3170 - hypothetical protein, at 47,249 to 47,851 GFF3170 Position (kb) 46 47Strain fitness (log2 ratio) -1 0 1at 45.686 kb on + strand, within GFF3167at 45.686 kb on + strand, within GFF3167at 45.687 kb on - strand, within GFF3167at 45.687 kb on - strand, within GFF3167at 45.687 kb on - strand, within GFF3167at 45.879 kb on - strand, within GFF3167at 45.879 kb on - strand, within GFF3167at 46.511 kb on - strandat 46.844 kb on - strandat 47.461 kb on - strand, within GFF3170at 47.722 kb on + strand, within GFF3170

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
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45,686 + GFF3167 0.49 +0.2
45,686 + GFF3167 0.49 +0.3
45,687 - GFF3167 0.49 +0.5
45,687 - GFF3167 0.49 +0.1
45,687 - GFF3167 0.49 -0.1
45,879 - GFF3167 0.61 -0.9
45,879 - GFF3167 0.61 +0.6
46,511 - +0.5
46,844 - -0.2
47,461 - GFF3170 0.35 -0.2
47,722 + GFF3170 0.78 +0.9

Or see this region's nucleotide sequence