Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3127

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
3,973	+				+0.2
3,974	-				-0.0
3,996	-				+0.1
4,093	+				+0.8
4,093	+				+0.2
4,094	-				-0.2
4,094	-				+1.8
4,712	-				-0.6
4,749	+				-0.1
4,749	+				-1.3
4,878	+				-0.3
4,878	+				+0.3
4,878	+				+0.2
4,948	+				-0.2
5,190	+		GFF3127	0.41	-0.7
5,190	+		GFF3127	0.41	+0.3
5,191	-		GFF3127	0.41	-0.4
5,227	+		GFF3127	0.47	-0.7
5,227	+		GFF3127	0.47	-0.8
5,227	+		GFF3127	0.47	-0.1
5,228	-		GFF3127	0.48	-0.4
5,228	-		GFF3127	0.48	-0.7
5,228	-		GFF3127	0.48	-0.5
5,228	-		GFF3127	0.48	+0.2
5,360	+		GFF3127	0.70	-0.3
5,361	-		GFF3127	0.70	-0.2
5,361	-		GFF3127	0.70	+0.1
5,422	+		GFF3127	0.80	-0.5
5,424	-		GFF3127	0.81	-1.7
5,464	+		GFF3127	0.87	-0.1
5,477	+		GFF3127	0.90	+0.1
5,477	+		GFF3127	0.90	-0.1
5,488	+				-0.4
5,548	+				+1.2
5,651	-				+2.3
5,768	+		GFF3128	0.14	-0.1
5,769	-		GFF3128	0.14	-0.1
5,860	+		GFF3128	0.20	+0.4
6,278	-		GFF3128	0.47	+0.2