Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3001 and GFF3002 overlap by 14 nucleotides GFF3002 and GFF3003 overlap by 4 nucleotides GFF3003 and GFF3004 overlap by 4 nucleotides GFF3004 and GFF3005 overlap by 4 nucleotides
GFF3001 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase, at 79,090 to 80,436
GFF3001
GFF3002 - (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-), at 80,423 to 80,731
GFF3002
GFF3003 - Lysophospholipid acyltransferase, at 80,728 to 81,633
GFF3003
GFF3004 - FIG027190: Putative transmembrane protein, at 81,630 to 82,193
GFF3004
GFF3005 - FIG021862: membrane protein, exporter, at 82,190 to 84,529
GFF3005
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 80.017 kb on + strand, within GFF3001 at 80.017 kb on + strand, within GFF3001 at 80.017 kb on + strand, within GFF3001 at 80.017 kb on + strand, within GFF3001 at 80.017 kb on + strand, within GFF3001 at 80.018 kb on - strand, within GFF3001 at 80.018 kb on - strand, within GFF3001 at 80.018 kb on - strand, within GFF3001 at 80.153 kb on - strand, within GFF3001 at 80.153 kb on - strand, within GFF3001 at 80.153 kb on - strand, within GFF3001 at 80.863 kb on + strand, within GFF3003 at 80.863 kb on + strand, within GFF3003 at 80.863 kb on + strand, within GFF3003 at 80.864 kb on - strand, within GFF3003 at 80.909 kb on - strand, within GFF3003 at 80.909 kb on - strand, within GFF3003 at 80.909 kb on - strand, within GFF3003 at 80.909 kb on - strand, within GFF3003 at 80.999 kb on - strand, within GFF3003 at 80.999 kb on - strand, within GFF3003 at 81.175 kb on + strand, within GFF3003 at 81.175 kb on + strand, within GFF3003 at 81.176 kb on - strand, within GFF3003 at 81.449 kb on - strand, within GFF3003 at 81.449 kb on - strand, within GFF3003 at 81.553 kb on + strand at 81.592 kb on + strand at 81.592 kb on + strand at 81.592 kb on + strand at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.011 kb on + strand, within GFF3004 at 82.012 kb on - strand, within GFF3004 at 82.012 kb on - strand, within GFF3004 at 82.012 kb on - strand, within GFF3004 at 82.140 kb on + strand at 82.141 kb on - strand at 82.141 kb on - strand at 82.523 kb on + strand, within GFF3005 at 82.524 kb on - strand, within GFF3005
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 80,017 + GFF3001 0.69 +0.1 80,017 + GFF3001 0.69 +0.3 80,017 + GFF3001 0.69 +1.2 80,017 + GFF3001 0.69 +1.1 80,017 + GFF3001 0.69 -0.2 80,018 - GFF3001 0.69 -1.5 80,018 - GFF3001 0.69 -0.2 80,018 - GFF3001 0.69 +0.2 80,153 - GFF3001 0.79 +1.3 80,153 - GFF3001 0.79 +0.5 80,153 - GFF3001 0.79 +0.1 80,863 + GFF3003 0.15 -1.5 80,863 + GFF3003 0.15 -0.2 80,863 + GFF3003 0.15 -0.1 80,864 - GFF3003 0.15 -0.2 80,909 - GFF3003 0.20 -0.7 80,909 - GFF3003 0.20 -0.3 80,909 - GFF3003 0.20 -0.9 80,909 - GFF3003 0.20 -0.6 80,999 - GFF3003 0.30 -0.2 80,999 - GFF3003 0.30 -0.7 81,175 + GFF3003 0.49 -0.4 81,175 + GFF3003 0.49 -1.9 81,176 - GFF3003 0.49 -0.1 81,449 - GFF3003 0.80 +1.1 81,449 - GFF3003 0.80 -2.4 81,553 + +0.3 81,592 + +1.1 81,592 + +0.5 81,592 + -0.5 82,011 + GFF3004 0.68 +0.1 82,011 + GFF3004 0.68 -0.3 82,011 + GFF3004 0.68 +0.1 82,011 + GFF3004 0.68 -0.1 82,011 + GFF3004 0.68 -0.5 82,011 + GFF3004 0.68 -0.9 82,011 + GFF3004 0.68 -1.5 82,012 - GFF3004 0.68 +0.2 82,012 - GFF3004 0.68 -0.3 82,012 - GFF3004 0.68 -1.4 82,140 + -1.9 82,141 - -1.5 82,141 - +0.9 82,523 + GFF3005 0.14 -0.5 82,524 - GFF3005 0.14 -0.4
Or see this region's nucleotide sequence