Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2981

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
57,981	+		GFF2980	0.15	+0.0
58,008	+		GFF2980	0.21	-0.3
58,041	+		GFF2980	0.27	+1.1
58,042	-		GFF2980	0.27	-0.1
58,042	-		GFF2980	0.27	-0.3
58,042	-		GFF2980	0.27	-0.2
58,042	-		GFF2980	0.27	+0.2
58,042	-		GFF2980	0.27	+1.4
58,044	+		GFF2980	0.28	-0.2
58,044	+		GFF2980	0.28	+1.6
58,045	-		GFF2980	0.28	-0.3
58,045	-		GFF2980	0.28	-0.1
58,069	-		GFF2980	0.33	+0.2
58,173	+		GFF2980	0.53	+0.3
58,206	+		GFF2980	0.59	-0.4
58,206	+		GFF2980	0.59	-0.4
58,207	-		GFF2980	0.59	-1.1
58,440	+				-0.3
58,441	-				-0.2
58,477	-				+0.3
58,613	-				+1.1
58,694	-		GFF2981	0.13	+0.3
58,694	-		GFF2981	0.13	-0.1
58,694	-		GFF2981	0.13	-0.1
59,138	-		GFF2981	0.38	-2.1
59,138	-		GFF2981	0.38	-0.5
59,777	-		GFF2981	0.74	-0.6
60,155	-				-0.1
60,155	-				+0.1
60,214	+				+0.5
60,215	-				-0.5
60,423	+				+0.4
60,423	+				-0.3
60,423	+				-0.4
60,423	+				-0.7
60,424	-				-0.0
60,424	-				+0.0
60,447	+				-0.1
60,448	-				+0.9
60,702	+		GFF2982	0.10	+1.1
60,840	+		GFF2982	0.14	+0.8
60,841	-		GFF2982	0.14	-0.2
60,903	+		GFF2982	0.16	+0.7
60,903	+		GFF2982	0.16	-0.1
60,924	+		GFF2982	0.16	-0.7
60,924	+		GFF2982	0.16	+0.2
60,925	-		GFF2982	0.16	+0.3
60,925	-		GFF2982	0.16	-0.0
61,167	+		GFF2982	0.23	-0.5
61,168	-		GFF2982	0.23	-1.5
61,168	-		GFF2982	0.23	-0.6
61,168	-		GFF2982	0.23	-1.7
61,168	-		GFF2982	0.23	+0.1
61,182	+		GFF2982	0.24	+1.3