Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2946 and GFF2947 are separated by 161 nucleotides GFF2947 and GFF2948 are separated by 15 nucleotides GFF2948 and GFF2949 are separated by 12 nucleotides GFF2949 and GFF2950 overlap by 4 nucleotides
GFF2946 - ATP synthase epsilon chain (EC 3.6.3.14), at 27,421 to 27,837
GFF2946
GFF2947 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 27,999 to 28,553
GFF2947
GFF2948 - FIG004694: Hypothetical protein, at 28,569 to 29,096
GFF2948
GFF2949 - Beta-propeller domains of methanol dehydrogenase type, at 29,109 to 30,023
GFF2949
GFF2950 - LemA family protein, at 30,020 to 30,628
GFF2950
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1 at 27.820 kb on + strand at 27.821 kb on - strand at 27.835 kb on - strand at 27.858 kb on + strand at 27.858 kb on + strand at 27.858 kb on + strand at 27.858 kb on + strand at 27.858 kb on + strand at 27.859 kb on - strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.928 kb on + strand at 27.929 kb on - strand at 27.929 kb on - strand at 27.929 kb on - strand at 27.929 kb on - strand at 27.929 kb on - strand at 27.929 kb on - strand at 27.929 kb on - strand at 27.929 kb on - strand at 27.930 kb on - strand at 28.089 kb on + strand, within GFF2947 at 28.089 kb on + strand, within GFF2947 at 28.089 kb on + strand, within GFF2947 at 28.089 kb on + strand, within GFF2947 at 28.089 kb on + strand, within GFF2947 at 28.089 kb on + strand, within GFF2947 at 28.090 kb on - strand, within GFF2947 at 28.090 kb on - strand, within GFF2947 at 28.090 kb on - strand, within GFF2947 at 28.090 kb on - strand, within GFF2947 at 28.090 kb on - strand, within GFF2947 at 28.158 kb on + strand, within GFF2947 at 28.158 kb on + strand, within GFF2947 at 28.158 kb on + strand, within GFF2947 at 28.159 kb on - strand, within GFF2947 at 28.159 kb on - strand, within GFF2947 at 28.159 kb on - strand, within GFF2947 at 28.159 kb on - strand, within GFF2947 at 28.159 kb on - strand, within GFF2947 at 28.159 kb on - strand, within GFF2947 at 28.810 kb on + strand, within GFF2948 at 28.810 kb on + strand, within GFF2948 at 28.810 kb on + strand, within GFF2948 at 28.810 kb on + strand, within GFF2948 at 28.810 kb on + strand, within GFF2948 at 28.811 kb on - strand, within GFF2948 at 28.811 kb on - strand, within GFF2948 at 28.811 kb on - strand, within GFF2948 at 28.811 kb on - strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.927 kb on + strand, within GFF2948 at 28.928 kb on - strand, within GFF2948 at 28.928 kb on - strand, within GFF2948 at 28.928 kb on - strand, within GFF2948 at 28.928 kb on - strand, within GFF2948 at 29.587 kb on + strand, within GFF2949 at 29.587 kb on + strand, within GFF2949 at 29.588 kb on - strand, within GFF2949 at 29.779 kb on + strand, within GFF2949 at 29.780 kb on - strand, within GFF2949 at 29.780 kb on - strand, within GFF2949
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 27,820 + -1.2 27,821 - -0.3 27,835 - -0.3 27,858 + +0.1 27,858 + -0.3 27,858 + +0.7 27,858 + +0.0 27,858 + -0.5 27,859 - -1.2 27,928 + +0.0 27,928 + +0.4 27,928 + +0.3 27,928 + -0.3 27,928 + +0.5 27,928 + +0.4 27,928 + +0.1 27,928 + -0.2 27,928 + -1.2 27,928 + +0.0 27,928 + -0.2 27,929 - -0.2 27,929 - +0.9 27,929 - -0.4 27,929 - +0.7 27,929 - +0.1 27,929 - -0.6 27,929 - -0.8 27,929 - +0.2 27,930 - +1.7 28,089 + GFF2947 0.16 -0.6 28,089 + GFF2947 0.16 +0.7 28,089 + GFF2947 0.16 -0.8 28,089 + GFF2947 0.16 -0.3 28,089 + GFF2947 0.16 -0.2 28,089 + GFF2947 0.16 -0.3 28,090 - GFF2947 0.16 +0.5 28,090 - GFF2947 0.16 -0.7 28,090 - GFF2947 0.16 -0.0 28,090 - GFF2947 0.16 -0.2 28,090 - GFF2947 0.16 +1.1 28,158 + GFF2947 0.29 -0.4 28,158 + GFF2947 0.29 -0.5 28,158 + GFF2947 0.29 -0.1 28,159 - GFF2947 0.29 +1.1 28,159 - GFF2947 0.29 -0.4 28,159 - GFF2947 0.29 -1.4 28,159 - GFF2947 0.29 -0.7 28,159 - GFF2947 0.29 +0.5 28,159 - GFF2947 0.29 -0.5 28,810 + GFF2948 0.46 +0.8 28,810 + GFF2948 0.46 +0.4 28,810 + GFF2948 0.46 +0.2 28,810 + GFF2948 0.46 +0.5 28,810 + GFF2948 0.46 +1.7 28,811 - GFF2948 0.46 -0.2 28,811 - GFF2948 0.46 +0.5 28,811 - GFF2948 0.46 +1.1 28,811 - GFF2948 0.46 -0.2 28,927 + GFF2948 0.68 -0.1 28,927 + GFF2948 0.68 +0.6 28,927 + GFF2948 0.68 -0.2 28,927 + GFF2948 0.68 -0.0 28,927 + GFF2948 0.68 -0.5 28,927 + GFF2948 0.68 +0.3 28,927 + GFF2948 0.68 -0.5 28,927 + GFF2948 0.68 +0.1 28,927 + GFF2948 0.68 -0.2 28,927 + GFF2948 0.68 -0.0 28,928 - GFF2948 0.68 +0.5 28,928 - GFF2948 0.68 +1.1 28,928 - GFF2948 0.68 +0.3 28,928 - GFF2948 0.68 -0.2 29,587 + GFF2949 0.52 +0.2 29,587 + GFF2949 0.52 -1.9 29,588 - GFF2949 0.52 +0.4 29,779 + GFF2949 0.73 -0.0 29,780 - GFF2949 0.73 +0.3 29,780 - GFF2949 0.73 +0.4
Or see this region's nucleotide sequence