Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2928 and GFF2929 are separated by 9 nucleotides GFF2929 and GFF2930 overlap by 32 nucleotides GFF2930 and GFF2931 overlap by 4 nucleotides
GFF2928 - putative membrane transport protein, at 11,903 to 13,138
GFF2928
GFF2929 - Sugar transport PTS system IIa component, at 13,148 to 13,594
GFF2929
GFF2930 - Phosphotransferase system, phosphocarrier protein HPr, at 13,563 to 13,832
GFF2930
GFF2931 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 13,829 to 15,583
GFF2931
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.579 kb on - strand, within GFF2928 at 12.641 kb on + strand, within GFF2928 at 12.641 kb on + strand, within GFF2928 at 12.641 kb on + strand, within GFF2928 at 12.641 kb on + strand, within GFF2928 at 12.642 kb on - strand, within GFF2928 at 12.642 kb on - strand, within GFF2928 at 12.642 kb on - strand, within GFF2928 at 12.643 kb on + strand, within GFF2928 at 12.643 kb on + strand, within GFF2928 at 12.644 kb on - strand, within GFF2928 at 12.644 kb on - strand, within GFF2928 at 12.644 kb on - strand, within GFF2928 at 12.851 kb on + strand, within GFF2928 at 12.851 kb on + strand, within GFF2928 at 12.852 kb on - strand, within GFF2928 at 12.852 kb on - strand, within GFF2928 at 12.941 kb on + strand, within GFF2928 at 12.941 kb on + strand, within GFF2928 at 12.941 kb on + strand, within GFF2928 at 12.942 kb on - strand, within GFF2928 at 13.085 kb on + strand at 13.085 kb on + strand at 13.085 kb on + strand at 13.085 kb on + strand at 13.085 kb on + strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.137 kb on - strand at 13.137 kb on - strand at 13.592 kb on + strand at 13.592 kb on + strand at 13.592 kb on + strand at 13.592 kb on + strand at 13.592 kb on + strand at 13.593 kb on - strand at 13.593 kb on - strand at 13.593 kb on - strand at 13.593 kb on - strand at 13.922 kb on + strand at 13.922 kb on + strand at 13.923 kb on - strand at 13.923 kb on - strand at 13.923 kb on - strand at 14.141 kb on + strand, within GFF2931 at 14.141 kb on + strand, within GFF2931 at 14.141 kb on + strand, within GFF2931 at 14.141 kb on + strand, within GFF2931 at 14.141 kb on + strand, within GFF2931 at 14.142 kb on - strand, within GFF2931 at 14.142 kb on - strand, within GFF2931 at 14.142 kb on - strand, within GFF2931 at 14.142 kb on - strand, within GFF2931 at 14.214 kb on - strand, within GFF2931 at 14.214 kb on - strand, within GFF2931 at 14.214 kb on - strand, within GFF2931 at 14.594 kb on + strand, within GFF2931 at 14.822 kb on + strand, within GFF2931 at 14.822 kb on + strand, within GFF2931 at 14.822 kb on + strand, within GFF2931 at 14.823 kb on - strand, within GFF2931 at 14.823 kb on - strand, within GFF2931 at 14.831 kb on + strand, within GFF2931
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 12,579 - GFF2928 0.55 +0.5 12,641 + GFF2928 0.60 -0.3 12,641 + GFF2928 0.60 +1.1 12,641 + GFF2928 0.60 +0.8 12,641 + GFF2928 0.60 -0.1 12,642 - GFF2928 0.60 +0.3 12,642 - GFF2928 0.60 -0.7 12,642 - GFF2928 0.60 -0.0 12,643 + GFF2928 0.60 +0.6 12,643 + GFF2928 0.60 -0.3 12,644 - GFF2928 0.60 -0.5 12,644 - GFF2928 0.60 -0.3 12,644 - GFF2928 0.60 -0.3 12,851 + GFF2928 0.77 +0.3 12,851 + GFF2928 0.77 +0.0 12,852 - GFF2928 0.77 +2.1 12,852 - GFF2928 0.77 +0.5 12,941 + GFF2928 0.84 -0.4 12,941 + GFF2928 0.84 +0.5 12,941 + GFF2928 0.84 -0.2 12,942 - GFF2928 0.84 -0.3 13,085 + +0.2 13,085 + -1.2 13,085 + -0.8 13,085 + +0.0 13,085 + +0.1 13,086 - +0.4 13,086 - +1.3 13,086 - +0.7 13,086 - +0.1 13,086 - -0.7 13,086 - +0.3 13,137 - -1.3 13,137 - -0.8 13,592 + -1.2 13,592 + -1.2 13,592 + -0.1 13,592 + -1.1 13,592 + +0.5 13,593 - -1.4 13,593 - -1.5 13,593 - -1.5 13,593 - -1.2 13,922 + -0.7 13,922 + -2.6 13,923 - -0.9 13,923 - -1.4 13,923 - -0.7 14,141 + GFF2931 0.18 -0.6 14,141 + GFF2931 0.18 +0.1 14,141 + GFF2931 0.18 -1.8 14,141 + GFF2931 0.18 -1.1 14,141 + GFF2931 0.18 -1.4 14,142 - GFF2931 0.18 +0.5 14,142 - GFF2931 0.18 +0.1 14,142 - GFF2931 0.18 +0.1 14,142 - GFF2931 0.18 -1.3 14,214 - GFF2931 0.22 -0.2 14,214 - GFF2931 0.22 -2.0 14,214 - GFF2931 0.22 -1.8 14,594 + GFF2931 0.44 -0.7 14,822 + GFF2931 0.57 -0.4 14,822 + GFF2931 0.57 -0.8 14,822 + GFF2931 0.57 -0.5 14,823 - GFF2931 0.57 -1.6 14,823 - GFF2931 0.57 -1.8 14,831 + GFF2931 0.57 -0.2
Or see this region's nucleotide sequence