Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2920 and GFF2921 are separated by 96 nucleotides GFF2921 and GFF2922 are separated by 150 nucleotides GFF2922 and GFF2923 are separated by 65 nucleotides GFF2923 and GFF2924 are separated by 73 nucleotides
GFF2920 - Histone acetyltransferase HPA2 and related acetyltransferases, at 6,246 to 6,722
GFF2920
GFF2921 - Cytochrome b, at 6,819 to 7,487
GFF2921
GFF2922 - putative c'cytochrome, at 7,638 to 8,087
GFF2922
GFF2923 - Cytochrome c-type biogenesis protein ResA, at 8,153 to 8,680
GFF2923
GFF2924 - FIG00933091: hypothetical protein, at 8,754 to 9,458
GFF2924
Position (kb) 7
8
9 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 6.655 kb on + strand, within GFF2920 at 6.655 kb on + strand, within GFF2920 at 6.656 kb on - strand, within GFF2920 at 6.656 kb on - strand, within GFF2920 at 6.794 kb on + strand at 6.794 kb on + strand at 6.794 kb on + strand at 6.794 kb on + strand at 6.795 kb on - strand at 6.795 kb on - strand at 6.795 kb on - strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.997 kb on + strand, within GFF2921 at 6.998 kb on - strand, within GFF2921 at 7.063 kb on + strand, within GFF2921 at 7.064 kb on - strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.252 kb on + strand, within GFF2921 at 7.253 kb on - strand, within GFF2921 at 7.253 kb on - strand, within GFF2921 at 7.253 kb on - strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.358 kb on - strand, within GFF2921 at 7.358 kb on - strand, within GFF2921 at 7.523 kb on + strand at 7.523 kb on + strand at 7.523 kb on + strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.531 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.534 kb on + strand at 7.534 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.608 kb on + strand at 7.608 kb on + strand at 7.645 kb on + strand at 7.646 kb on - strand at 7.734 kb on + strand, within GFF2922 at 7.735 kb on - strand, within GFF2922 at 8.085 kb on + strand at 8.085 kb on + strand at 8.085 kb on + strand at 8.085 kb on + strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.086 kb on - strand at 8.256 kb on + strand, within GFF2923 at 8.256 kb on + strand, within GFF2923 at 8.256 kb on + strand, within GFF2923 at 8.257 kb on - strand, within GFF2923 at 8.257 kb on - strand, within GFF2923 at 8.379 kb on + strand, within GFF2923 at 8.379 kb on + strand, within GFF2923 at 8.380 kb on - strand, within GFF2923 at 8.380 kb on - strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.421 kb on + strand, within GFF2923 at 8.422 kb on - strand, within GFF2923 at 8.431 kb on - strand, within GFF2923 at 8.431 kb on - strand, within GFF2923 at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.703 kb on + strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand at 8.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 6,655 + GFF2920 0.86 -0.4 6,655 + GFF2920 0.86 +0.4 6,656 - GFF2920 0.86 -0.1 6,656 - GFF2920 0.86 +0.2 6,794 + -0.4 6,794 + +0.7 6,794 + -0.1 6,794 + +1.4 6,795 - -0.2 6,795 - +0.2 6,795 - -0.1 6,796 + +0.1 6,796 + +0.3 6,796 + +2.1 6,796 + -0.5 6,796 + +0.1 6,796 + +0.6 6,796 + +0.8 6,796 + -0.2 6,796 + -0.9 6,796 + +0.0 6,796 + -1.1 6,796 + +0.1 6,796 + -0.4 6,796 + +0.4 6,796 + -0.6 6,796 + +0.3 6,796 + +0.5 6,796 + +0.1 6,796 + -0.1 6,796 + +1.1 6,796 + -0.7 6,796 + +0.0 6,796 + +1.7 6,797 - +0.2 6,797 - +0.6 6,797 - +0.1 6,797 - +0.4 6,797 - -0.0 6,797 - -0.1 6,797 - +1.1 6,797 - +0.1 6,797 - -0.5 6,797 - -0.4 6,797 - -0.4 6,797 - -1.0 6,797 - +0.1 6,994 + GFF2921 0.26 +0.1 6,994 + GFF2921 0.26 +0.4 6,994 + GFF2921 0.26 -0.2 6,994 + GFF2921 0.26 +0.7 6,994 + GFF2921 0.26 -0.0 6,994 + GFF2921 0.26 -0.2 6,994 + GFF2921 0.26 -0.2 6,994 + GFF2921 0.26 -1.4 6,995 - GFF2921 0.26 +0.6 6,995 - GFF2921 0.26 +0.4 6,995 - GFF2921 0.26 -0.1 6,995 - GFF2921 0.26 +0.3 6,995 - GFF2921 0.26 +0.3 6,995 - GFF2921 0.26 +0.6 6,995 - GFF2921 0.26 -0.2 6,997 + GFF2921 0.27 +0.1 6,998 - GFF2921 0.27 +0.0 7,063 + GFF2921 0.36 +1.5 7,064 - GFF2921 0.37 +1.2 7,179 + GFF2921 0.54 -0.2 7,179 + GFF2921 0.54 +0.8 7,179 + GFF2921 0.54 +0.3 7,179 + GFF2921 0.54 -0.3 7,179 + GFF2921 0.54 +0.9 7,180 - GFF2921 0.54 -1.6 7,180 - GFF2921 0.54 +0.4 7,180 - GFF2921 0.54 +1.1 7,180 - GFF2921 0.54 -0.3 7,180 - GFF2921 0.54 -0.7 7,180 - GFF2921 0.54 +0.8 7,180 - GFF2921 0.54 +0.3 7,252 + GFF2921 0.65 +0.0 7,253 - GFF2921 0.65 -0.5 7,253 - GFF2921 0.65 -0.5 7,253 - GFF2921 0.65 -0.5 7,276 + GFF2921 0.68 +0.4 7,276 + GFF2921 0.68 -0.7 7,276 + GFF2921 0.68 +0.1 7,276 + GFF2921 0.68 +0.2 7,276 + GFF2921 0.68 +0.3 7,276 + GFF2921 0.68 -0.1 7,276 + GFF2921 0.68 +0.2 7,276 + GFF2921 0.68 -0.1 7,276 + GFF2921 0.68 -0.1 7,276 + GFF2921 0.68 -0.0 7,277 - GFF2921 0.68 -0.4 7,277 - GFF2921 0.68 -0.4 7,277 - GFF2921 0.68 +0.1 7,277 - GFF2921 0.68 +0.5 7,277 - GFF2921 0.68 +0.7 7,277 - GFF2921 0.68 -0.3 7,277 - GFF2921 0.68 +0.2 7,277 - GFF2921 0.68 +0.3 7,277 - GFF2921 0.68 -0.2 7,358 - GFF2921 0.81 +0.6 7,358 - GFF2921 0.81 +0.1 7,523 + +0.6 7,523 + +0.7 7,523 + -0.1 7,524 - -0.5 7,524 - +1.4 7,524 - +0.7 7,531 + -2.5 7,532 + +0.9 7,532 + -0.1 7,532 + +0.3 7,532 + -0.1 7,532 + -0.9 7,532 + +0.3 7,532 + -1.1 7,532 + +0.8 7,532 + +0.1 7,532 + +0.5 7,532 + -0.7 7,532 + -0.7 7,532 + -0.0 7,532 + +0.1 7,532 + -0.5 7,532 + -0.2 7,532 + +0.5 7,533 - -0.1 7,533 - -0.0 7,533 - -0.3 7,533 - +0.8 7,533 - +0.8 7,533 - -0.9 7,533 - -0.4 7,533 - -0.3 7,533 - -0.1 7,533 - -0.5 7,533 - -1.0 7,533 - +0.0 7,533 - -1.5 7,533 - -0.1 7,533 - +0.9 7,533 - -1.0 7,533 - +1.4 7,534 + +0.1 7,534 + -0.4 7,572 + -0.2 7,572 + +0.7 7,572 + -0.6 7,572 + -0.7 7,572 + -0.1 7,572 + +0.0 7,572 + +0.7 7,572 + -0.2 7,573 - -0.1 7,573 - +0.6 7,573 - -0.5 7,573 - +0.3 7,573 - +0.2 7,573 - -0.1 7,573 - -0.6 7,573 - -0.3 7,573 - -1.0 7,573 - -0.2 7,573 - -0.4 7,608 + +0.1 7,608 + +1.8 7,645 + +1.5 7,646 - -0.0 7,734 + GFF2922 0.21 +1.3 7,735 - GFF2922 0.22 -1.3 8,085 + +0.4 8,085 + -0.7 8,085 + -0.4 8,085 + +0.5 8,086 - +0.1 8,086 - +0.6 8,086 - -0.2 8,086 - +0.8 8,086 - +1.3 8,086 - +0.3 8,086 - +0.2 8,086 - -0.3 8,256 + GFF2923 0.20 -3.4 8,256 + GFF2923 0.20 -1.7 8,256 + GFF2923 0.20 -2.4 8,257 - GFF2923 0.20 -2.4 8,257 - GFF2923 0.20 -1.9 8,379 + GFF2923 0.43 -2.6 8,379 + GFF2923 0.43 -3.4 8,380 - GFF2923 0.43 -4.4 8,380 - GFF2923 0.43 -1.5 8,421 + GFF2923 0.51 -1.2 8,421 + GFF2923 0.51 -3.0 8,421 + GFF2923 0.51 -1.9 8,421 + GFF2923 0.51 -2.4 8,421 + GFF2923 0.51 -3.0 8,422 - GFF2923 0.51 -5.5 8,431 - GFF2923 0.53 -0.9 8,431 - GFF2923 0.53 -1.2 8,703 + +0.2 8,703 + -0.3 8,703 + +1.5 8,703 + -1.5 8,703 + -0.4 8,703 + +0.1 8,703 + -0.3 8,703 + -1.2 8,703 + +1.1 8,703 + +0.1 8,703 + -0.4 8,703 + -0.2 8,703 + -0.9 8,703 + -0.0 8,704 - -0.4 8,704 - -0.2 8,704 - +1.1 8,704 - -0.3 8,704 - +0.2 8,704 - +0.3 8,704 - -0.1
Or see this region's nucleotide sequence