Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2859
Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_AminoAcid20 rep A; time point 3 |
---|---|---|---|---|---|
remove | |||||
446,389 | + | GFF2858 | 0.20 | -0.0 | |
446,390 | - | GFF2858 | 0.20 | -0.3 | |
446,559 | + | GFF2858 | 0.38 | +0.1 | |
446,767 | + | GFF2858 | 0.60 | +0.3 | |
446,768 | - | GFF2858 | 0.60 | +0.4 | |
446,893 | + | GFF2858 | 0.73 | -0.1 | |
446,893 | + | GFF2858 | 0.73 | -0.1 | |
446,893 | + | GFF2858 | 0.73 | +0.1 | |
446,894 | - | GFF2858 | 0.73 | +0.5 | |
447,031 | + | GFF2858 | 0.88 | -0.2 | |
447,031 | + | GFF2858 | 0.88 | -0.8 | |
447,146 | - | +1.6 | |||
447,367 | + | GFF2859 | 0.24 | +0.8 | |
447,367 | + | GFF2859 | 0.24 | -0.2 | |
447,826 | + | GFF2859 | 0.73 | -0.5 | |
448,033 | + | +0.0 | |||
448,034 | - | +0.3 | |||
448,077 | - | +0.0 | |||
448,115 | - | -2.6 | |||
448,117 | + | +0.0 | |||
448,117 | + | +0.4 | |||
448,118 | - | +0.2 | |||
448,118 | - | -0.3 | |||
448,118 | - | -0.5 | |||
448,118 | - | -1.0 | |||
448,128 | + | +0.4 | |||
448,289 | - | +0.0 | |||
448,901 | - | GFF2860 | 0.79 | +0.0 | |
448,987 | - | GFF2860 | 0.89 | -0.2 | |
449,011 | + | +0.1 | |||
449,020 | + | +0.0 | |||
449,020 | + | +0.0 | |||
449,020 | + | -0.1 | |||
449,020 | + | +0.3 | |||
449,020 | + | +0.1 | |||
449,021 | - | +0.3 |
Or see this region's nucleotide sequence