Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2680

Experiment: Ying_AminoAcid20 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2679 and GFF2680 are separated by 3 nucleotidesGFF2680 and GFF2681 are separated by 14 nucleotides GFF2679 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 269,408 to 270,562 GFF2679 GFF2680 - cytosolic long-chain acyl-CoA thioester hydrolase family protein, at 270,566 to 271,039 GFF2680 GFF2681 - Sulfate permease family protein, at 271,054 to 272,724 GFF2681 Position (kb) 270 271 272Strain fitness (log2 ratio) -1 0 1at 269.873 kb on + strand, within GFF2679at 269.874 kb on - strand, within GFF2679at 269.958 kb on - strand, within GFF2679at 270.117 kb on - strand, within GFF2679at 270.117 kb on - strand, within GFF2679at 270.135 kb on - strand, within GFF2679at 270.173 kb on + strand, within GFF2679at 270.176 kb on + strand, within GFF2679at 270.176 kb on + strand, within GFF2679at 270.176 kb on + strand, within GFF2679at 270.177 kb on - strand, within GFF2679at 270.583 kb on - strandat 270.890 kb on + strand, within GFF2680at 270.891 kb on - strand, within GFF2680at 270.894 kb on + strand, within GFF2680at 270.895 kb on - strand, within GFF2680at 271.184 kb on + strandat 271.397 kb on + strand, within GFF2681at 271.547 kb on + strand, within GFF2681at 271.790 kb on + strand, within GFF2681at 271.790 kb on + strand, within GFF2681at 272.027 kb on + strand, within GFF2681at 272.027 kb on + strand, within GFF2681

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
remove
269,873 + GFF2679 0.40 +0.4
269,874 - GFF2679 0.40 -0.0
269,958 - GFF2679 0.48 +0.3
270,117 - GFF2679 0.61 -0.1
270,117 - GFF2679 0.61 +0.2
270,135 - GFF2679 0.63 +0.2
270,173 + GFF2679 0.66 -0.0
270,176 + GFF2679 0.66 +0.3
270,176 + GFF2679 0.66 +0.1
270,176 + GFF2679 0.66 +1.3
270,177 - GFF2679 0.67 -0.9
270,583 - +1.0
270,890 + GFF2680 0.68 +1.0
270,891 - GFF2680 0.69 -0.7
270,894 + GFF2680 0.69 -0.2
270,895 - GFF2680 0.69 -0.0
271,184 + -0.2
271,397 + GFF2681 0.21 +1.0
271,547 + GFF2681 0.30 -0.6
271,790 + GFF2681 0.44 +1.0
271,790 + GFF2681 0.44 +0.1
272,027 + GFF2681 0.58 -1.3
272,027 + GFF2681 0.58 +0.8

Or see this region's nucleotide sequence