Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2652 and GFF2653 are separated by 1 nucleotides GFF2653 and GFF2654 overlap by 4 nucleotides GFF2654 and GFF2655 overlap by 4 nucleotides GFF2655 and GFF2656 overlap by 4 nucleotides
GFF2652 - Transcriptional regulator, MarR family, at 246,400 to 246,888
GFF2652
GFF2653 - Na(+) H(+) antiporter subunit G, at 246,890 to 247,291
GFF2653
GFF2654 - Na(+) H(+) antiporter subunit F, at 247,288 to 247,566
GFF2654
GFF2655 - Na(+) H(+) antiporter subunit E, at 247,563 to 248,054
GFF2655
GFF2656 - Na(+) H(+) antiporter subunit D, at 248,051 to 249,760
GFF2656
Position (kb) 247
248 Strain fitness (log2 ratio) -2
-1
0
1 at 246.313 kb on + strand at 246.313 kb on + strand at 246.314 kb on - strand at 246.318 kb on + strand at 246.318 kb on + strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.419 kb on - strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.431 kb on - strand at 246.431 kb on - strand at 246.431 kb on - strand at 246.478 kb on + strand, within GFF2652 at 246.631 kb on + strand, within GFF2652 at 246.632 kb on - strand, within GFF2652 at 246.632 kb on - strand, within GFF2652 at 246.697 kb on + strand, within GFF2652 at 246.698 kb on - strand, within GFF2652 at 246.698 kb on - strand, within GFF2652 at 246.836 kb on - strand, within GFF2652 at 246.836 kb on - strand, within GFF2652 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.379 kb on + strand, within GFF2654 at 247.379 kb on + strand, within GFF2654 at 247.380 kb on - strand, within GFF2654 at 247.380 kb on - strand, within GFF2654 at 247.380 kb on - strand, within GFF2654 at 247.436 kb on + strand, within GFF2654 at 247.485 kb on - strand, within GFF2654 at 247.520 kb on + strand, within GFF2654 at 247.594 kb on + strand at 247.978 kb on + strand, within GFF2655 at 247.978 kb on + strand, within GFF2655 at 247.978 kb on + strand, within GFF2655 at 247.978 kb on + strand, within GFF2655 at 247.979 kb on - strand, within GFF2655 at 248.139 kb on + strand at 248.139 kb on + strand at 248.140 kb on - strand at 248.154 kb on + strand at 248.155 kb on - strand at 248.155 kb on - strand at 248.181 kb on + strand at 248.250 kb on + strand, within GFF2656
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 246,313 + +0.3 246,313 + -0.1 246,314 - -0.0 246,318 + -0.0 246,318 + -0.3 246,319 - -0.4 246,319 - -0.2 246,319 - -0.3 246,319 - -0.9 246,419 - -0.7 246,427 + -0.0 246,427 + -0.7 246,427 + +0.9 246,427 + -0.8 246,427 + +0.4 246,428 - -1.2 246,428 - +0.0 246,428 - +1.0 246,428 - +1.7 246,428 - -1.0 246,431 - -0.4 246,431 - -0.0 246,431 - -0.1 246,478 + GFF2652 0.16 -0.7 246,631 + GFF2652 0.47 -1.7 246,632 - GFF2652 0.47 +0.3 246,632 - GFF2652 0.47 +1.7 246,697 + GFF2652 0.61 -0.5 246,698 - GFF2652 0.61 +0.5 246,698 - GFF2652 0.61 -0.1 246,836 - GFF2652 0.89 +1.5 246,836 - GFF2652 0.89 -0.2 247,101 + GFF2653 0.52 +0.2 247,101 + GFF2653 0.52 -1.1 247,101 + GFF2653 0.52 +0.3 247,101 + GFF2653 0.52 -2.2 247,101 + GFF2653 0.52 -0.1 247,101 + GFF2653 0.52 +0.6 247,102 - GFF2653 0.53 +0.5 247,102 - GFF2653 0.53 -0.4 247,102 - GFF2653 0.53 +0.4 247,102 - GFF2653 0.53 +0.2 247,102 - GFF2653 0.53 +0.2 247,102 - GFF2653 0.53 -0.4 247,379 + GFF2654 0.33 -0.0 247,379 + GFF2654 0.33 +0.2 247,380 - GFF2654 0.33 +0.7 247,380 - GFF2654 0.33 -0.4 247,380 - GFF2654 0.33 +1.0 247,436 + GFF2654 0.53 +0.9 247,485 - GFF2654 0.71 +1.5 247,520 + GFF2654 0.83 -0.7 247,594 + -0.0 247,978 + GFF2655 0.84 -0.3 247,978 + GFF2655 0.84 +0.3 247,978 + GFF2655 0.84 -0.4 247,978 + GFF2655 0.84 +0.2 247,979 - GFF2655 0.85 +0.8 248,139 + -0.1 248,139 + +0.4 248,140 - -0.0 248,154 + -0.9 248,155 - -0.1 248,155 - +0.4 248,181 + +0.0 248,250 + GFF2656 0.12 -0.7
Or see this region's nucleotide sequence