Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2638 and GFF2639 are separated by 34 nucleotides GFF2639 and GFF2640 overlap by 4 nucleotides GFF2640 and GFF2641 are separated by 44 nucleotides GFF2641 and GFF2642 are separated by 23 nucleotides GFF2642 and GFF2643 are separated by 150 nucleotides
GFF2638 - Conserved uncharacterized protein CreA, at 234,720 to 235,193
GFF2638
GFF2639 - hypothetical protein, at 235,228 to 235,707
GFF2639
GFF2640 - Single-stranded DNA-binding protein, at 235,704 to 236,015
GFF2640
GFF2641 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 236,060 to 237,340
GFF2641
GFF2642 - COGs COG0840, at 237,364 to 237,639
GFF2642
GFF2643 - hypothetical protein, at 237,790 to 238,473
GFF2643
Position (kb) 236
237
238 Strain fitness (log2 ratio) -2
-1
0
1
2 at 235.098 kb on + strand, within GFF2638 at 235.108 kb on - strand, within GFF2638 at 235.215 kb on + strand at 235.215 kb on + strand at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.642 kb on + strand, within GFF2639 at 235.776 kb on + strand, within GFF2640 at 236.439 kb on - strand, within GFF2641 at 236.439 kb on - strand, within GFF2641 at 236.765 kb on + strand, within GFF2641 at 236.765 kb on + strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.831 kb on + strand, within GFF2641 at 236.831 kb on + strand, within GFF2641 at 237.023 kb on + strand, within GFF2641 at 237.023 kb on + strand, within GFF2641 at 237.024 kb on - strand, within GFF2641 at 237.024 kb on - strand, within GFF2641 at 237.024 kb on - strand, within GFF2641 at 237.305 kb on + strand at 237.305 kb on + strand at 237.305 kb on + strand at 237.726 kb on + strand at 237.726 kb on + strand at 237.726 kb on + strand at 237.853 kb on + strand at 237.853 kb on + strand at 237.854 kb on - strand at 237.854 kb on - strand at 237.854 kb on - strand at 237.854 kb on - strand at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.926 kb on - strand, within GFF2643 at 237.926 kb on - strand, within GFF2643 at 238.048 kb on + strand, within GFF2643 at 238.049 kb on - strand, within GFF2643 at 238.196 kb on - strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.292 kb on - strand, within GFF2643 at 238.312 kb on + strand, within GFF2643 at 238.312 kb on + strand, within GFF2643 at 238.313 kb on - strand, within GFF2643 at 238.313 kb on - strand, within GFF2643 at 238.313 kb on - strand, within GFF2643
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 235,098 + GFF2638 0.80 -0.2 235,108 - GFF2638 0.82 -1.0 235,215 + -1.6 235,215 + +0.8 235,339 + GFF2639 0.23 -0.3 235,339 + GFF2639 0.23 +0.3 235,339 + GFF2639 0.23 -0.3 235,339 + GFF2639 0.23 +0.0 235,339 + GFF2639 0.23 +0.0 235,339 + GFF2639 0.23 +0.6 235,339 + GFF2639 0.23 +0.0 235,340 - GFF2639 0.23 +0.1 235,340 - GFF2639 0.23 +0.4 235,340 - GFF2639 0.23 -0.3 235,340 - GFF2639 0.23 -0.7 235,642 + GFF2639 0.86 +0.5 235,776 + GFF2640 0.23 -0.1 236,439 - GFF2641 0.30 -0.1 236,439 - GFF2641 0.30 +0.4 236,765 + GFF2641 0.55 -0.1 236,765 + GFF2641 0.55 -0.1 236,766 - GFF2641 0.55 +0.7 236,766 - GFF2641 0.55 -0.9 236,766 - GFF2641 0.55 -1.2 236,766 - GFF2641 0.55 +2.2 236,766 - GFF2641 0.55 -0.2 236,831 + GFF2641 0.60 +1.4 236,831 + GFF2641 0.60 -0.5 237,023 + GFF2641 0.75 -1.8 237,023 + GFF2641 0.75 -0.2 237,024 - GFF2641 0.75 -0.5 237,024 - GFF2641 0.75 -1.0 237,024 - GFF2641 0.75 -0.3 237,305 + -0.3 237,305 + +0.4 237,305 + -1.8 237,726 + +0.4 237,726 + +0.8 237,726 + +0.1 237,853 + +0.0 237,853 + +0.8 237,854 - +0.8 237,854 - -0.3 237,854 - -0.2 237,854 - +0.0 237,925 + GFF2643 0.20 -0.1 237,925 + GFF2643 0.20 +0.7 237,925 + GFF2643 0.20 +1.1 237,925 + GFF2643 0.20 +0.1 237,925 + GFF2643 0.20 +1.0 237,926 - GFF2643 0.20 +0.4 237,926 - GFF2643 0.20 -0.2 238,048 + GFF2643 0.38 -0.3 238,049 - GFF2643 0.38 -0.2 238,196 - GFF2643 0.59 -0.3 238,291 + GFF2643 0.73 +0.4 238,291 + GFF2643 0.73 -0.7 238,291 + GFF2643 0.73 -0.1 238,291 + GFF2643 0.73 -0.2 238,292 - GFF2643 0.73 +0.2 238,312 + GFF2643 0.76 -1.3 238,312 + GFF2643 0.76 -0.2 238,313 - GFF2643 0.76 -0.3 238,313 - GFF2643 0.76 -0.4 238,313 - GFF2643 0.76 +0.5
Or see this region's nucleotide sequence