Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2597 and GFF2598 are separated by 23 nucleotides GFF2598 and GFF2599 are separated by 8 nucleotides GFF2599 and GFF2600 are separated by 79 nucleotides
GFF2597 - Hypothetical protein YaeJ with similarity to translation release factor, at 189,533 to 189,937
GFF2597
GFF2598 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 189,961 to 190,722
GFF2598
GFF2599 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 190,731 to 192,146
GFF2599
GFF2600 - tRNA-specific 2-thiouridylase MnmA, at 192,226 to 193,377
GFF2600
Position (kb) 190
191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 190.160 kb on + strand, within GFF2598 at 190.160 kb on + strand, within GFF2598 at 190.490 kb on + strand, within GFF2598 at 190.491 kb on - strand, within GFF2598 at 190.957 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.120 kb on - strand, within GFF2599 at 191.120 kb on - strand, within GFF2599 at 191.126 kb on - strand, within GFF2599 at 191.191 kb on + strand, within GFF2599 at 191.192 kb on - strand, within GFF2599 at 191.272 kb on + strand, within GFF2599 at 191.273 kb on - strand, within GFF2599 at 191.947 kb on + strand, within GFF2599 at 191.948 kb on - strand, within GFF2599 at 192.159 kb on - strand at 192.159 kb on - strand at 192.159 kb on - strand at 192.159 kb on - strand at 192.604 kb on + strand, within GFF2600 at 192.677 kb on - strand, within GFF2600
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 190,160 + GFF2598 0.26 -0.7 190,160 + GFF2598 0.26 -0.9 190,490 + GFF2598 0.69 -1.0 190,491 - GFF2598 0.70 +0.1 190,957 + GFF2599 0.16 -0.3 191,119 + GFF2599 0.27 -0.9 191,119 + GFF2599 0.27 +1.7 191,119 + GFF2599 0.27 -1.0 191,119 + GFF2599 0.27 +1.0 191,119 + GFF2599 0.27 -0.0 191,119 + GFF2599 0.27 +0.5 191,119 + GFF2599 0.27 -0.2 191,120 - GFF2599 0.27 +0.6 191,120 - GFF2599 0.27 -0.3 191,126 - GFF2599 0.28 +0.2 191,191 + GFF2599 0.32 +0.6 191,192 - GFF2599 0.33 -0.6 191,272 + GFF2599 0.38 +0.1 191,273 - GFF2599 0.38 -0.3 191,947 + GFF2599 0.86 +0.6 191,948 - GFF2599 0.86 +0.2 192,159 - +0.2 192,159 - +0.6 192,159 - -0.5 192,159 - -0.5 192,604 + GFF2600 0.33 -2.9 192,677 - GFF2600 0.39 -0.6
Or see this region's nucleotide sequence