Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2416 and GFF2417 are separated by 644 nucleotides GFF2417 and GFF2418 overlap by 4 nucleotides
GFF2416 - two component, sigma54 specific, transcriptional regulator, Fis family, at 61,738 to 62,448
GFF2416
GFF2417 - response regulator receiver protein, at 63,093 to 63,479
GFF2417
GFF2418 - Response regulator, at 63,476 to 64,237
GFF2418
Position (kb) 63
64 Strain fitness (log2 ratio) -2
-1
0
1 at 62.152 kb on + strand, within GFF2416 at 62.153 kb on - strand, within GFF2416 at 62.223 kb on + strand, within GFF2416 at 62.223 kb on + strand, within GFF2416 at 62.223 kb on + strand, within GFF2416 at 62.224 kb on - strand, within GFF2416 at 62.255 kb on + strand, within GFF2416 at 62.461 kb on + strand at 62.461 kb on + strand at 62.461 kb on + strand at 62.464 kb on + strand at 62.464 kb on + strand at 62.465 kb on - strand at 62.465 kb on - strand at 62.468 kb on + strand at 62.536 kb on + strand at 62.536 kb on + strand at 62.536 kb on + strand at 62.537 kb on - strand at 62.606 kb on - strand at 62.777 kb on - strand at 62.855 kb on + strand at 62.895 kb on + strand at 62.895 kb on + strand at 62.896 kb on - strand at 62.906 kb on + strand at 62.907 kb on - strand at 62.972 kb on + strand at 62.972 kb on + strand at 62.972 kb on + strand at 62.972 kb on + strand at 62.972 kb on + strand at 63.056 kb on + strand at 63.056 kb on + strand at 63.057 kb on - strand at 63.106 kb on + strand at 63.106 kb on + strand at 63.106 kb on + strand at 63.107 kb on - strand at 63.107 kb on - strand at 63.107 kb on - strand at 63.399 kb on + strand, within GFF2417 at 63.399 kb on + strand, within GFF2417 at 63.400 kb on - strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.404 kb on - strand, within GFF2417 at 63.404 kb on - strand, within GFF2417 at 63.404 kb on - strand, within GFF2417 at 63.563 kb on + strand, within GFF2418 at 63.644 kb on + strand, within GFF2418 at 63.644 kb on + strand, within GFF2418 at 63.645 kb on - strand, within GFF2418 at 63.710 kb on + strand, within GFF2418 at 63.710 kb on + strand, within GFF2418 at 63.711 kb on - strand, within GFF2418 at 63.711 kb on - strand, within GFF2418 at 64.005 kb on + strand, within GFF2418 at 64.005 kb on + strand, within GFF2418 at 64.006 kb on - strand, within GFF2418 at 64.023 kb on - strand, within GFF2418 at 64.234 kb on - strand at 64.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 62,152 + GFF2416 0.58 -0.2 62,153 - GFF2416 0.58 +0.2 62,223 + GFF2416 0.68 +0.3 62,223 + GFF2416 0.68 -1.0 62,223 + GFF2416 0.68 +0.6 62,224 - GFF2416 0.68 -1.1 62,255 + GFF2416 0.73 -1.5 62,461 + -0.3 62,461 + +0.6 62,461 + -0.7 62,464 + +0.6 62,464 + -0.3 62,465 - -0.1 62,465 - -0.0 62,468 + +0.8 62,536 + +0.9 62,536 + -0.6 62,536 + +0.9 62,537 - -0.1 62,606 - +0.3 62,777 - -2.1 62,855 + -0.3 62,895 + -0.4 62,895 + -0.4 62,896 - +0.0 62,906 + +0.0 62,907 - +0.9 62,972 + +0.5 62,972 + -0.2 62,972 + -0.2 62,972 + +0.4 62,972 + +0.7 63,056 + -1.0 63,056 + +0.1 63,057 - +0.6 63,106 + -0.0 63,106 + +0.4 63,106 + +0.1 63,107 - -0.3 63,107 - +0.1 63,107 - -0.1 63,399 + GFF2417 0.79 -1.7 63,399 + GFF2417 0.79 +0.6 63,400 - GFF2417 0.79 +0.0 63,403 + GFF2417 0.80 +0.0 63,403 + GFF2417 0.80 +0.5 63,403 + GFF2417 0.80 -0.3 63,403 + GFF2417 0.80 -0.2 63,403 + GFF2417 0.80 -1.5 63,404 - GFF2417 0.80 +0.3 63,404 - GFF2417 0.80 -0.1 63,404 - GFF2417 0.80 -0.3 63,563 + GFF2418 0.11 +0.2 63,644 + GFF2418 0.22 +0.1 63,644 + GFF2418 0.22 -1.1 63,645 - GFF2418 0.22 +0.1 63,710 + GFF2418 0.31 -0.7 63,710 + GFF2418 0.31 +0.6 63,711 - GFF2418 0.31 +0.4 63,711 - GFF2418 0.31 +0.3 64,005 + GFF2418 0.69 -0.7 64,005 + GFF2418 0.69 -0.3 64,006 - GFF2418 0.70 +0.3 64,023 - GFF2418 0.72 -0.2 64,234 - -0.6 64,346 + -0.0
Or see this region's nucleotide sequence