Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF234 and GFF235 are separated by 43 nucleotides GFF235 and GFF236 are separated by 44 nucleotides GFF236 and GFF237 overlap by 4 nucleotides GFF237 and GFF238 are separated by 30 nucleotides
GFF234 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 255,035 to 256,204
GFF234
GFF235 - Putative RNA polymerase sigma factor, at 256,248 to 257,153
GFF235
GFF236 - Alkylhydroperoxidase AhpD core, at 257,198 to 257,656
GFF236
GFF237 - Putative secreted protein, at 257,653 to 258,393
GFF237
GFF238 - Enoyl-CoA hydratase (EC 4.2.1.17), at 258,424 to 259,113
GFF238
Position (kb) 257
258 Strain fitness (log2 ratio) -1
0
1 at 256.202 kb on + strand at 256.202 kb on + strand at 256.203 kb on - strand at 256.203 kb on - strand at 256.240 kb on - strand at 256.240 kb on - strand at 256.305 kb on + strand at 256.477 kb on - strand, within GFF235 at 256.477 kb on - strand, within GFF235 at 257.244 kb on - strand, within GFF236 at 257.441 kb on + strand, within GFF236 at 257.441 kb on + strand, within GFF236 at 257.442 kb on - strand, within GFF236 at 258.025 kb on + strand, within GFF237 at 258.026 kb on - strand, within GFF237 at 258.026 kb on - strand, within GFF237 at 258.026 kb on - strand, within GFF237 at 258.301 kb on + strand, within GFF237 at 258.301 kb on + strand, within GFF237 at 258.302 kb on - strand, within GFF237 at 258.411 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 256,202 + +1.0 256,202 + -0.2 256,203 - -0.2 256,203 - -0.6 256,240 - -0.6 256,240 - +0.2 256,305 + +0.3 256,477 - GFF235 0.25 -0.5 256,477 - GFF235 0.25 +0.2 257,244 - GFF236 0.10 -0.5 257,441 + GFF236 0.53 -0.3 257,441 + GFF236 0.53 -0.0 257,442 - GFF236 0.53 -0.0 258,025 + GFF237 0.50 +0.2 258,026 - GFF237 0.50 +0.8 258,026 - GFF237 0.50 +0.1 258,026 - GFF237 0.50 +0.2 258,301 + GFF237 0.87 -0.1 258,301 + GFF237 0.87 +0.1 258,302 - GFF237 0.88 +0.0 258,411 + -0.0
Or see this region's nucleotide sequence