Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2223

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,109,510	+		GFF2221	0.54	-0.2
1,109,510	+		GFF2221	0.54	-0.8
1,109,577	-		GFF2221	0.84	+0.8
1,109,577	-		GFF2221	0.84	-0.3
1,109,577	-		GFF2221	0.84	+0.5
1,109,746	+		GFF2222	0.15	+0.0
1,109,746	+		GFF2222	0.15	-0.5
1,109,746	+		GFF2222	0.15	-0.5
1,109,747	-		GFF2222	0.16	+0.2
1,109,747	-		GFF2222	0.16	+0.2
1,109,750	-		GFF2222	0.16	-0.6
1,109,750	-		GFF2222	0.16	+0.0
1,109,750	-		GFF2222	0.16	+1.0
1,110,419	-				+0.1
1,110,622	+		GFF2223	0.23	-1.5
1,110,622	+		GFF2223	0.23	-0.2
1,110,623	-		GFF2223	0.24	-0.8
1,110,661	+		GFF2223	0.31	-2.1
1,110,662	-		GFF2223	0.31	-0.3
1,110,662	-		GFF2223	0.31	-0.0
1,110,662	-		GFF2223	0.31	+0.8
1,110,662	-		GFF2223	0.31	-0.7
1,111,573	-		GFF2225	0.35	-0.8
1,111,756	-		GFF2225	0.62	+1.0