Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2168

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,059,430	-		GFF2167	0.40	+0.6
1,059,579	+		GFF2167	0.50	+0.1
1,059,699	+		GFF2167	0.59	-0.0
1,059,949	-		GFF2167	0.76	+0.5
1,060,046	-		GFF2167	0.82	-0.6
1,060,080	+		GFF2167	0.85	-0.2
1,060,233	+				-0.8
1,060,233	+				+0.3
1,060,234	-				-0.3
1,060,234	-				+0.7
1,060,509	-		GFF2168	0.24	-1.0
1,060,724	+		GFF2168	0.47	-0.4
1,060,724	+		GFF2168	0.47	+0.0
1,060,725	-		GFF2168	0.47	-0.9
1,060,725	-		GFF2168	0.47	+0.5
1,061,305	+				+0.3
1,061,305	+				-0.6
1,061,305	+				-0.7
1,061,306	-				-1.2
1,061,381	+				+0.1
1,061,381	+				+0.0
1,061,382	-				+0.6
1,061,408	+				-0.2
1,061,409	-				+0.4
1,061,582	+		GFF2169	0.28	-0.3
1,061,793	-		GFF2169	0.53	-1.3
1,062,017	+		GFF2169	0.80	-0.0