Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2088 and GFF2089 are separated by 117 nucleotides GFF2089 and GFF2090 are separated by 258 nucleotides GFF2090 and GFF2091 are separated by 122 nucleotides GFF2091 and GFF2092 overlap by 4 nucleotides
GFF2088 - Fosfomycin resistance protein FosX, at 973,179 to 973,361
GFF2088
GFF2089 - Probable signal peptide protein, at 973,479 to 974,081
GFF2089
GFF2090 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 974,340 to 976,328
GFF2090
GFF2091 - hypothetical protein, at 976,451 to 976,582
GFF2091
GFF2092 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 976,579 to 980,115
GFF2092
Position (kb) 974
975
976
977 Strain fitness (log2 ratio) -2
-1
0
1
2 at 973.374 kb on + strand at 973.452 kb on + strand at 973.453 kb on - strand at 973.453 kb on - strand at 973.454 kb on - strand at 973.710 kb on + strand, within GFF2089 at 973.710 kb on + strand, within GFF2089 at 973.711 kb on - strand, within GFF2089 at 973.818 kb on + strand, within GFF2089 at 973.818 kb on + strand, within GFF2089 at 973.818 kb on + strand, within GFF2089 at 973.818 kb on + strand, within GFF2089 at 973.819 kb on - strand, within GFF2089 at 974.083 kb on - strand at 974.482 kb on - strand at 974.538 kb on + strand at 974.766 kb on + strand, within GFF2090 at 974.766 kb on + strand, within GFF2090 at 974.767 kb on - strand, within GFF2090 at 974.767 kb on - strand, within GFF2090 at 974.767 kb on - strand, within GFF2090 at 974.799 kb on + strand, within GFF2090 at 974.800 kb on - strand, within GFF2090 at 974.817 kb on + strand, within GFF2090 at 974.818 kb on - strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.859 kb on + strand, within GFF2090 at 974.860 kb on - strand, within GFF2090 at 974.982 kb on + strand, within GFF2090 at 974.983 kb on - strand, within GFF2090 at 975.199 kb on - strand, within GFF2090 at 975.465 kb on + strand, within GFF2090 at 975.549 kb on + strand, within GFF2090 at 975.562 kb on - strand, within GFF2090 at 975.649 kb on - strand, within GFF2090 at 975.651 kb on - strand, within GFF2090 at 975.760 kb on - strand, within GFF2090 at 975.760 kb on - strand, within GFF2090 at 976.128 kb on + strand, within GFF2090 at 976.129 kb on - strand, within GFF2090 at 976.206 kb on + strand at 976.206 kb on + strand at 976.206 kb on + strand at 976.206 kb on + strand at 976.207 kb on - strand at 976.221 kb on + strand at 976.222 kb on - strand at 976.772 kb on + strand at 977.042 kb on + strand, within GFF2092 at 977.043 kb on - strand, within GFF2092 at 977.043 kb on - strand, within GFF2092 at 977.058 kb on - strand, within GFF2092
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 973,374 + +0.4 973,452 + -1.0 973,453 - +0.1 973,453 - +2.1 973,454 - -0.8 973,710 + GFF2089 0.38 +0.4 973,710 + GFF2089 0.38 +1.1 973,711 - GFF2089 0.38 -0.3 973,818 + GFF2089 0.56 +0.0 973,818 + GFF2089 0.56 +0.2 973,818 + GFF2089 0.56 +0.7 973,818 + GFF2089 0.56 +1.1 973,819 - GFF2089 0.56 -1.4 974,083 - +0.3 974,482 - -0.1 974,538 + +0.1 974,766 + GFF2090 0.21 -0.9 974,766 + GFF2090 0.21 -0.9 974,767 - GFF2090 0.21 +0.7 974,767 - GFF2090 0.21 -2.1 974,767 - GFF2090 0.21 -0.4 974,799 + GFF2090 0.23 -0.1 974,800 - GFF2090 0.23 -0.1 974,817 + GFF2090 0.24 -0.8 974,818 - GFF2090 0.24 +1.5 974,844 + GFF2090 0.25 +0.6 974,844 + GFF2090 0.25 -0.5 974,844 + GFF2090 0.25 -0.2 974,844 + GFF2090 0.25 -0.8 974,844 + GFF2090 0.25 +0.7 974,844 + GFF2090 0.25 -0.1 974,859 + GFF2090 0.26 -0.2 974,860 - GFF2090 0.26 -1.3 974,982 + GFF2090 0.32 -1.3 974,983 - GFF2090 0.32 +0.3 975,199 - GFF2090 0.43 +1.3 975,465 + GFF2090 0.57 -0.3 975,549 + GFF2090 0.61 -0.1 975,562 - GFF2090 0.61 -0.0 975,649 - GFF2090 0.66 -0.2 975,651 - GFF2090 0.66 -0.6 975,760 - GFF2090 0.71 +0.2 975,760 - GFF2090 0.71 +0.4 976,128 + GFF2090 0.90 -0.4 976,129 - GFF2090 0.90 +0.8 976,206 + -0.8 976,206 + -0.2 976,206 + +0.1 976,206 + +0.4 976,207 - -0.3 976,221 + -0.1 976,222 - +0.3 976,772 + +0.7 977,042 + GFF2092 0.13 -1.3 977,043 - GFF2092 0.13 -0.5 977,043 - GFF2092 0.13 +0.4 977,058 - GFF2092 0.14 -0.5
Or see this region's nucleotide sequence