Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2043 and GFF2044 overlap by 1 nucleotides GFF2044 and GFF2045 are separated by 159 nucleotides GFF2045 and GFF2046 overlap by 4 nucleotides
GFF2043 - Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster, at 922,965 to 924,266
GFF2043
GFF2044 - Agmatinase (EC 3.5.3.11), at 924,266 to 925,198
GFF2044
GFF2045 - two-component response regulator, at 925,358 to 926,038
GFF2045
GFF2046 - Two-component hybrid sensor and regulator, at 926,035 to 927,804
GFF2046
Position (kb) 924
925
926 Strain fitness (log2 ratio) -2
-1
0
1 at 923.329 kb on + strand, within GFF2043 at 923.329 kb on + strand, within GFF2043 at 923.330 kb on - strand, within GFF2043 at 923.330 kb on - strand, within GFF2043 at 923.330 kb on - strand, within GFF2043 at 923.380 kb on + strand, within GFF2043 at 923.381 kb on - strand, within GFF2043 at 923.381 kb on - strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.473 kb on + strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.474 kb on - strand, within GFF2043 at 923.527 kb on + strand, within GFF2043 at 923.693 kb on - strand, within GFF2043 at 923.743 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.869 kb on + strand, within GFF2043 at 923.870 kb on - strand, within GFF2043 at 923.870 kb on - strand, within GFF2043 at 923.870 kb on - strand, within GFF2043 at 923.875 kb on + strand, within GFF2043 at 923.875 kb on + strand, within GFF2043 at 923.875 kb on + strand, within GFF2043 at 924.220 kb on + strand at 924.220 kb on + strand at 924.220 kb on + strand at 924.220 kb on + strand at 924.221 kb on - strand at 924.306 kb on + strand at 924.307 kb on - strand at 924.357 kb on + strand at 924.357 kb on + strand at 924.358 kb on - strand at 924.517 kb on - strand, within GFF2044 at 924.517 kb on - strand, within GFF2044 at 924.633 kb on + strand, within GFF2044 at 924.634 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.769 kb on + strand, within GFF2044 at 924.770 kb on - strand, within GFF2044 at 925.176 kb on + strand at 925.233 kb on + strand at 925.233 kb on + strand at 925.344 kb on + strand at 925.344 kb on + strand at 925.344 kb on + strand at 925.344 kb on + strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.547 kb on + strand, within GFF2045 at 925.547 kb on + strand, within GFF2045 at 925.548 kb on - strand, within GFF2045 at 925.728 kb on - strand, within GFF2045 at 925.766 kb on + strand, within GFF2045 at 926.101 kb on + strand at 926.101 kb on + strand at 926.101 kb on + strand at 926.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 923,329 + GFF2043 0.28 -0.5 923,329 + GFF2043 0.28 -0.2 923,330 - GFF2043 0.28 +0.6 923,330 - GFF2043 0.28 +0.2 923,330 - GFF2043 0.28 -0.2 923,380 + GFF2043 0.32 +0.3 923,381 - GFF2043 0.32 +0.9 923,381 - GFF2043 0.32 -0.2 923,473 + GFF2043 0.39 -0.2 923,473 + GFF2043 0.39 +0.7 923,473 + GFF2043 0.39 -1.3 923,473 + GFF2043 0.39 -0.4 923,473 + GFF2043 0.39 +0.7 923,473 + GFF2043 0.39 +1.1 923,473 + GFF2043 0.39 -1.5 923,474 - GFF2043 0.39 +0.1 923,474 - GFF2043 0.39 +0.1 923,474 - GFF2043 0.39 +1.1 923,474 - GFF2043 0.39 +0.7 923,474 - GFF2043 0.39 -1.1 923,474 - GFF2043 0.39 -0.2 923,474 - GFF2043 0.39 +0.3 923,474 - GFF2043 0.39 +1.0 923,474 - GFF2043 0.39 +1.7 923,527 + GFF2043 0.43 +0.9 923,693 - GFF2043 0.56 -1.1 923,743 + GFF2043 0.60 +1.3 923,869 + GFF2043 0.69 +0.1 923,869 + GFF2043 0.69 -1.9 923,869 + GFF2043 0.69 -1.5 923,869 + GFF2043 0.69 -1.0 923,869 + GFF2043 0.69 +0.6 923,869 + GFF2043 0.69 +0.3 923,870 - GFF2043 0.70 -0.0 923,870 - GFF2043 0.70 +0.1 923,870 - GFF2043 0.70 +0.1 923,875 + GFF2043 0.70 -0.0 923,875 + GFF2043 0.70 -0.2 923,875 + GFF2043 0.70 -0.6 924,220 + -0.1 924,220 + +0.0 924,220 + -0.1 924,220 + +0.5 924,221 - -0.1 924,306 + +0.8 924,307 - +0.4 924,357 + +1.7 924,357 + +0.7 924,358 - +0.2 924,517 - GFF2044 0.27 +0.2 924,517 - GFF2044 0.27 -0.4 924,633 + GFF2044 0.39 +0.8 924,634 - GFF2044 0.39 +1.2 924,721 - GFF2044 0.49 +0.4 924,721 - GFF2044 0.49 -1.2 924,721 - GFF2044 0.49 +0.3 924,721 - GFF2044 0.49 -0.7 924,769 + GFF2044 0.54 +0.5 924,770 - GFF2044 0.54 +0.0 925,176 + +0.8 925,233 + -0.2 925,233 + +0.9 925,344 + -0.4 925,344 + +0.7 925,344 + +0.4 925,344 + -0.2 925,345 - +0.1 925,345 - -0.0 925,345 - +0.0 925,345 - +0.3 925,345 - -0.2 925,345 - -0.9 925,547 + GFF2045 0.28 -1.0 925,547 + GFF2045 0.28 -0.6 925,548 - GFF2045 0.28 -0.1 925,728 - GFF2045 0.54 +0.7 925,766 + GFF2045 0.60 -0.2 926,101 + +0.1 926,101 + -0.3 926,101 + -0.6 926,102 - +0.3
Or see this region's nucleotide sequence