Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2029

Experiment: Ying_AminoAcid20 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2028 and GFF2029 overlap by 4 nucleotidesGFF2029 and GFF2030 are separated by 11 nucleotides GFF2028 - Glutamine synthetase type I (EC 6.3.1.2), at 906,713 to 908,056 GFF2028 GFF2029 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 908,053 to 909,363 GFF2029 GFF2030 - Aldehyde dehydrogenase (EC 1.2.1.3), at 909,375 to 910,844 GFF2030 Position (kb) 908 909 910Strain fitness (log2 ratio) -1 0 1 2at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.416 kb on + strand, within GFF2028at 907.452 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.465 kb on - strand, within GFF2028at 907.465 kb on - strand, within GFF2028at 907.578 kb on + strand, within GFF2028at 907.578 kb on + strand, within GFF2028at 907.579 kb on - strand, within GFF2028at 907.579 kb on - strand, within GFF2028at 907.764 kb on + strand, within GFF2028at 907.765 kb on - strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 908.157 kb on - strandat 908.157 kb on - strandat 908.309 kb on + strand, within GFF2029at 908.310 kb on - strand, within GFF2029at 908.310 kb on - strand, within GFF2029at 908.442 kb on - strand, within GFF2029at 908.442 kb on - strand, within GFF2029at 908.828 kb on + strand, within GFF2029at 908.828 kb on + strand, within GFF2029at 908.828 kb on + strand, within GFF2029at 908.829 kb on - strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 909.071 kb on + strand, within GFF2029at 909.071 kb on + strand, within GFF2029at 909.071 kb on + strand, within GFF2029at 909.071 kb on + strand, within GFF2029at 909.072 kb on - strand, within GFF2029at 909.072 kb on - strand, within GFF2029at 909.072 kb on - strand, within GFF2029at 909.072 kb on - strand, within GFF2029at 909.095 kb on + strand, within GFF2029at 909.095 kb on + strand, within GFF2029at 909.095 kb on + strand, within GFF2029at 909.095 kb on + strand, within GFF2029at 909.096 kb on - strand, within GFF2029at 909.096 kb on - strand, within GFF2029at 909.421 kb on + strandat 909.421 kb on + strandat 909.421 kb on + strandat 909.422 kb on - strandat 909.422 kb on - strandat 909.509 kb on - strandat 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.601 kb on + strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.602 kb on - strand, within GFF2030at 909.603 kb on + strand, within GFF2030at 909.736 kb on + strand, within GFF2030at 909.736 kb on + strand, within GFF2030at 909.736 kb on + strand, within GFF2030at 909.736 kb on + strand, within GFF2030at 909.736 kb on + strand, within GFF2030at 909.736 kb on + strand, within GFF2030at 909.737 kb on - strand, within GFF2030at 909.737 kb on - strand, within GFF2030at 909.737 kb on - strand, within GFF2030at 909.737 kb on - strand, within GFF2030at 909.737 kb on - strand, within GFF2030at 909.814 kb on + strand, within GFF2030at 909.814 kb on + strand, within GFF2030at 909.815 kb on - strand, within GFF2030at 909.815 kb on - strand, within GFF2030at 909.815 kb on - strand, within GFF2030at 909.815 kb on - strand, within GFF2030at 909.815 kb on - strand, within GFF2030at 909.815 kb on - strand, within GFF2030at 909.895 kb on + strand, within GFF2030at 909.896 kb on - strand, within GFF2030at 909.896 kb on - strand, within GFF2030at 910.174 kb on + strand, within GFF2030

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
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907,158 + GFF2028 0.33 +0.1
907,158 + GFF2028 0.33 -0.2
907,158 + GFF2028 0.33 -1.0
907,158 + GFF2028 0.33 -0.9
907,158 + GFF2028 0.33 +0.5
907,158 + GFF2028 0.33 +0.4
907,158 + GFF2028 0.33 -0.5
907,158 + GFF2028 0.33 +1.4
907,159 - GFF2028 0.33 +0.1
907,159 - GFF2028 0.33 +1.4
907,159 - GFF2028 0.33 +0.1
907,159 - GFF2028 0.33 +0.1
907,416 + GFF2028 0.52 +0.3
907,452 + GFF2028 0.55 +0.3
907,464 + GFF2028 0.56 -0.1
907,464 + GFF2028 0.56 +1.1
907,464 + GFF2028 0.56 -1.2
907,464 + GFF2028 0.56 +0.7
907,464 + GFF2028 0.56 -0.1
907,464 + GFF2028 0.56 -0.4
907,465 - GFF2028 0.56 +0.5
907,465 - GFF2028 0.56 -0.2
907,578 + GFF2028 0.64 -0.0
907,578 + GFF2028 0.64 -1.1
907,579 - GFF2028 0.64 +1.1
907,579 - GFF2028 0.64 +0.0
907,764 + GFF2028 0.78 -0.5
907,765 - GFF2028 0.78 -0.5
907,842 + GFF2028 0.84 -0.1
907,842 + GFF2028 0.84 +0.1
907,842 + GFF2028 0.84 +2.3
907,842 + GFF2028 0.84 -1.0
907,842 + GFF2028 0.84 -0.5
907,843 - GFF2028 0.84 -0.2
907,843 - GFF2028 0.84 -0.4
907,843 - GFF2028 0.84 -0.3
907,843 - GFF2028 0.84 +0.5
907,843 - GFF2028 0.84 -0.4
907,843 - GFF2028 0.84 +1.0
907,843 - GFF2028 0.84 -0.4
908,157 - -0.3
908,157 - +0.2
908,309 + GFF2029 0.20 +0.5
908,310 - GFF2029 0.20 -0.4
908,310 - GFF2029 0.20 -0.4
908,442 - GFF2029 0.30 +1.2
908,442 - GFF2029 0.30 -0.6
908,828 + GFF2029 0.59 +0.1
908,828 + GFF2029 0.59 -1.2
908,828 + GFF2029 0.59 -1.4
908,829 - GFF2029 0.59 +1.3
908,864 + GFF2029 0.62 -0.4
908,864 + GFF2029 0.62 +0.2
908,864 + GFF2029 0.62 +0.1
908,864 + GFF2029 0.62 -0.1
908,864 + GFF2029 0.62 +0.4
908,864 + GFF2029 0.62 -1.7
908,864 + GFF2029 0.62 -0.7
908,864 + GFF2029 0.62 -0.7
908,865 - GFF2029 0.62 -0.3
908,865 - GFF2029 0.62 +0.4
908,865 - GFF2029 0.62 -0.8
908,865 - GFF2029 0.62 -0.8
908,865 - GFF2029 0.62 -0.4
908,865 - GFF2029 0.62 -0.4
909,071 + GFF2029 0.78 -0.5
909,071 + GFF2029 0.78 -0.0
909,071 + GFF2029 0.78 +0.3
909,071 + GFF2029 0.78 -0.2
909,072 - GFF2029 0.78 +2.1
909,072 - GFF2029 0.78 -0.5
909,072 - GFF2029 0.78 -0.5
909,072 - GFF2029 0.78 -0.1
909,095 + GFF2029 0.79 -1.2
909,095 + GFF2029 0.79 -0.8
909,095 + GFF2029 0.79 +0.8
909,095 + GFF2029 0.79 -0.5
909,096 - GFF2029 0.80 -0.8
909,096 - GFF2029 0.80 +0.8
909,421 + +0.1
909,421 + -0.2
909,421 + +1.2
909,422 - -0.5
909,422 - -0.4
909,509 - +0.2
909,601 + GFF2030 0.15 -0.5
909,601 + GFF2030 0.15 -0.5
909,601 + GFF2030 0.15 +0.2
909,601 + GFF2030 0.15 -0.0
909,601 + GFF2030 0.15 +0.2
909,601 + GFF2030 0.15 -0.2
909,601 + GFF2030 0.15 +0.8
909,601 + GFF2030 0.15 +0.2
909,601 + GFF2030 0.15 +0.4
909,601 + GFF2030 0.15 -0.2
909,601 + GFF2030 0.15 +1.4
909,602 - GFF2030 0.15 -0.5
909,602 - GFF2030 0.15 +0.1
909,602 - GFF2030 0.15 +0.1
909,602 - GFF2030 0.15 +0.3
909,602 - GFF2030 0.15 -0.3
909,602 - GFF2030 0.15 -0.7
909,602 - GFF2030 0.15 +0.7
909,602 - GFF2030 0.15 +0.5
909,602 - GFF2030 0.15 -0.1
909,602 - GFF2030 0.15 -0.1
909,602 - GFF2030 0.15 +0.6
909,602 - GFF2030 0.15 +0.3
909,602 - GFF2030 0.15 -0.5
909,602 - GFF2030 0.15 +0.8
909,602 - GFF2030 0.15 -0.5
909,602 - GFF2030 0.15 +1.1
909,603 + GFF2030 0.16 +0.4
909,736 + GFF2030 0.25 +0.1
909,736 + GFF2030 0.25 +0.1
909,736 + GFF2030 0.25 +0.1
909,736 + GFF2030 0.25 -1.0
909,736 + GFF2030 0.25 -1.7
909,736 + GFF2030 0.25 +0.3
909,737 - GFF2030 0.25 +0.3
909,737 - GFF2030 0.25 +1.1
909,737 - GFF2030 0.25 -0.2
909,737 - GFF2030 0.25 -0.0
909,737 - GFF2030 0.25 +0.9
909,814 + GFF2030 0.30 -0.6
909,814 + GFF2030 0.30 -0.1
909,815 - GFF2030 0.30 -0.9
909,815 - GFF2030 0.30 +0.4
909,815 - GFF2030 0.30 +0.6
909,815 - GFF2030 0.30 -0.0
909,815 - GFF2030 0.30 -1.5
909,815 - GFF2030 0.30 -0.2
909,895 + GFF2030 0.35 -0.3
909,896 - GFF2030 0.35 +0.3
909,896 - GFF2030 0.35 -0.2
910,174 + GFF2030 0.54 -0.1

Or see this region's nucleotide sequence