Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2014 and GFF2015 are separated by 6 nucleotides GFF2015 and GFF2016 are separated by 11 nucleotides GFF2016 and GFF2017 are separated by 61 nucleotides GFF2017 and GFF2018 overlap by 4 nucleotides
GFF2014 - FIG00932469: hypothetical protein, at 890,140 to 890,688
GFF2014
GFF2015 - Chromosome (plasmid) partitioning protein ParA, at 890,695 to 891,465
GFF2015
GFF2016 - Threonine efflux protein, at 891,477 to 892,091
GFF2016
GFF2017 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 892,153 to 892,827
GFF2017
GFF2018 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 892,824 to 894,791
GFF2018
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 891.478 kb on + strand at 891.478 kb on + strand at 891.478 kb on + strand at 891.478 kb on + strand at 891.478 kb on + strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.613 kb on + strand, within GFF2016 at 891.613 kb on + strand, within GFF2016 at 891.613 kb on + strand, within GFF2016 at 891.613 kb on + strand, within GFF2016 at 891.614 kb on - strand, within GFF2016 at 891.614 kb on - strand, within GFF2016 at 891.614 kb on - strand, within GFF2016 at 891.614 kb on - strand, within GFF2016 at 891.712 kb on + strand, within GFF2016 at 891.712 kb on + strand, within GFF2016 at 891.712 kb on + strand, within GFF2016 at 891.712 kb on + strand, within GFF2016 at 891.712 kb on + strand, within GFF2016 at 891.712 kb on + strand, within GFF2016 at 891.712 kb on + strand, within GFF2016 at 891.713 kb on - strand, within GFF2016 at 891.713 kb on - strand, within GFF2016 at 891.713 kb on - strand, within GFF2016 at 891.713 kb on - strand, within GFF2016 at 891.713 kb on - strand, within GFF2016 at 891.713 kb on - strand, within GFF2016 at 891.713 kb on - strand, within GFF2016 at 891.713 kb on - strand, within GFF2016 at 891.766 kb on + strand, within GFF2016 at 891.766 kb on + strand, within GFF2016 at 891.766 kb on + strand, within GFF2016 at 891.766 kb on + strand, within GFF2016 at 891.767 kb on - strand, within GFF2016 at 891.767 kb on - strand, within GFF2016 at 891.767 kb on - strand, within GFF2016 at 891.767 kb on - strand, within GFF2016 at 891.767 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 891.845 kb on - strand, within GFF2016 at 892.073 kb on - strand at 892.073 kb on - strand at 892.073 kb on - strand at 892.123 kb on + strand at 892.258 kb on - strand, within GFF2017 at 892.397 kb on + strand, within GFF2017 at 892.397 kb on + strand, within GFF2017 at 892.397 kb on + strand, within GFF2017 at 892.398 kb on - strand, within GFF2017 at 892.398 kb on - strand, within GFF2017 at 892.398 kb on - strand, within GFF2017 at 892.706 kb on + strand, within GFF2017 at 892.706 kb on + strand, within GFF2017 at 892.706 kb on + strand, within GFF2017 at 892.706 kb on + strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.707 kb on - strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.739 kb on + strand, within GFF2017 at 892.740 kb on - strand, within GFF2017 at 892.740 kb on - strand, within GFF2017 at 892.740 kb on - strand, within GFF2017 at 892.740 kb on - strand, within GFF2017 at 893.008 kb on + strand at 893.009 kb on - strand at 893.041 kb on + strand, within GFF2018 at 893.083 kb on + strand, within GFF2018 at 893.084 kb on - strand, within GFF2018 at 893.084 kb on - strand, within GFF2018 at 893.084 kb on - strand, within GFF2018
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 891,478 + -0.7 891,478 + -0.2 891,478 + +0.3 891,478 + +1.4 891,478 + -0.1 891,479 - -0.3 891,479 - -0.5 891,479 - +0.3 891,479 - +0.1 891,479 - -0.7 891,479 - -0.6 891,479 - +0.2 891,479 - -0.6 891,479 - +1.5 891,613 + GFF2016 0.22 +0.2 891,613 + GFF2016 0.22 -0.2 891,613 + GFF2016 0.22 -0.4 891,613 + GFF2016 0.22 +0.7 891,614 - GFF2016 0.22 -0.5 891,614 - GFF2016 0.22 +1.2 891,614 - GFF2016 0.22 -0.8 891,614 - GFF2016 0.22 -0.4 891,712 + GFF2016 0.38 +0.3 891,712 + GFF2016 0.38 -0.4 891,712 + GFF2016 0.38 +0.1 891,712 + GFF2016 0.38 +0.1 891,712 + GFF2016 0.38 +0.1 891,712 + GFF2016 0.38 -0.0 891,712 + GFF2016 0.38 -0.1 891,713 - GFF2016 0.38 +0.1 891,713 - GFF2016 0.38 +0.5 891,713 - GFF2016 0.38 +0.8 891,713 - GFF2016 0.38 -0.0 891,713 - GFF2016 0.38 -0.0 891,713 - GFF2016 0.38 -1.5 891,713 - GFF2016 0.38 -0.6 891,713 - GFF2016 0.38 +0.1 891,766 + GFF2016 0.47 +0.5 891,766 + GFF2016 0.47 -0.7 891,766 + GFF2016 0.47 -0.3 891,766 + GFF2016 0.47 -0.5 891,767 - GFF2016 0.47 -1.9 891,767 - GFF2016 0.47 -0.7 891,767 - GFF2016 0.47 -0.4 891,767 - GFF2016 0.47 -0.4 891,767 - GFF2016 0.47 +0.6 891,845 - GFF2016 0.60 +1.7 891,845 - GFF2016 0.60 -0.5 891,845 - GFF2016 0.60 -2.6 891,845 - GFF2016 0.60 -1.2 891,845 - GFF2016 0.60 -1.1 891,845 - GFF2016 0.60 -0.2 892,073 - -0.2 892,073 - -1.6 892,073 - -1.6 892,123 + +0.0 892,258 - GFF2017 0.16 -0.7 892,397 + GFF2017 0.36 -0.2 892,397 + GFF2017 0.36 -1.1 892,397 + GFF2017 0.36 -0.6 892,398 - GFF2017 0.36 -0.8 892,398 - GFF2017 0.36 -0.3 892,398 - GFF2017 0.36 -0.1 892,706 + GFF2017 0.82 -0.4 892,706 + GFF2017 0.82 +0.3 892,706 + GFF2017 0.82 -0.5 892,706 + GFF2017 0.82 +0.5 892,707 - GFF2017 0.82 +0.0 892,707 - GFF2017 0.82 -1.2 892,707 - GFF2017 0.82 -0.9 892,707 - GFF2017 0.82 +0.4 892,707 - GFF2017 0.82 +0.3 892,707 - GFF2017 0.82 -0.3 892,707 - GFF2017 0.82 -0.4 892,707 - GFF2017 0.82 +0.1 892,739 + GFF2017 0.87 -0.3 892,739 + GFF2017 0.87 +0.0 892,739 + GFF2017 0.87 -1.4 892,739 + GFF2017 0.87 -0.4 892,739 + GFF2017 0.87 -0.7 892,739 + GFF2017 0.87 +1.1 892,740 - GFF2017 0.87 +0.3 892,740 - GFF2017 0.87 -0.3 892,740 - GFF2017 0.87 -1.6 892,740 - GFF2017 0.87 -0.3 893,008 + -3.2 893,009 - -0.9 893,041 + GFF2018 0.11 -1.2 893,083 + GFF2018 0.13 -3.2 893,084 - GFF2018 0.13 -1.5 893,084 - GFF2018 0.13 -1.9 893,084 - GFF2018 0.13 -0.5
Or see this region's nucleotide sequence