Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1775 and GFF1776 overlap by 14 nucleotides GFF1776 and GFF1777 are separated by 42 nucleotides GFF1777 and GFF1778 are separated by 99 nucleotides
GFF1775 - hypothetical protein, at 640,407 to 641,333
GFF1775
GFF1776 - hypothetical protein, at 641,320 to 641,490
GFF1776
GFF1777 - Auxin Efflux Carrier, at 641,533 to 642,495
GFF1777
GFF1778 - ATP-dependent DNA helicase Rep, at 642,595 to 644,673
GFF1778
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1 at 640.750 kb on - strand, within GFF1775 at 640.781 kb on + strand, within GFF1775 at 640.781 kb on + strand, within GFF1775 at 640.781 kb on + strand, within GFF1775 at 641.104 kb on + strand, within GFF1775 at 641.104 kb on + strand, within GFF1775 at 641.105 kb on - strand, within GFF1775 at 641.105 kb on - strand, within GFF1775 at 641.105 kb on - strand, within GFF1775 at 641.125 kb on + strand, within GFF1775 at 641.795 kb on + strand, within GFF1777 at 641.796 kb on - strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.291 kb on - strand, within GFF1777 at 642.291 kb on - strand, within GFF1777 at 642.291 kb on - strand, within GFF1777 at 642.351 kb on - strand, within GFF1777 at 642.351 kb on - strand, within GFF1777 at 642.354 kb on - strand, within GFF1777 at 642.440 kb on + strand at 642.440 kb on + strand at 642.441 kb on - strand at 642.441 kb on - strand at 642.841 kb on - strand, within GFF1778 at 642.841 kb on - strand, within GFF1778 at 642.961 kb on - strand, within GFF1778 at 643.118 kb on - strand, within GFF1778 at 643.231 kb on + strand, within GFF1778 at 643.231 kb on + strand, within GFF1778 at 643.255 kb on + strand, within GFF1778 at 643.256 kb on - strand, within GFF1778 at 643.327 kb on + strand, within GFF1778 at 643.327 kb on + strand, within GFF1778 at 643.327 kb on + strand, within GFF1778 at 643.327 kb on + strand, within GFF1778 at 643.328 kb on - strand, within GFF1778 at 643.328 kb on - strand, within GFF1778 at 643.414 kb on + strand, within GFF1778 at 643.414 kb on + strand, within GFF1778 at 643.414 kb on + strand, within GFF1778 at 643.414 kb on + strand, within GFF1778 at 643.415 kb on - strand, within GFF1778
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 640,750 - GFF1775 0.37 -0.4 640,781 + GFF1775 0.40 -0.7 640,781 + GFF1775 0.40 -0.1 640,781 + GFF1775 0.40 -0.1 641,104 + GFF1775 0.75 -0.8 641,104 + GFF1775 0.75 -0.1 641,105 - GFF1775 0.75 +0.1 641,105 - GFF1775 0.75 -0.7 641,105 - GFF1775 0.75 +0.4 641,125 + GFF1775 0.77 +0.1 641,795 + GFF1777 0.27 -0.2 641,796 - GFF1777 0.27 -0.1 642,290 + GFF1777 0.79 +0.7 642,290 + GFF1777 0.79 +1.1 642,290 + GFF1777 0.79 -0.1 642,290 + GFF1777 0.79 +1.1 642,291 - GFF1777 0.79 -1.5 642,291 - GFF1777 0.79 +0.2 642,291 - GFF1777 0.79 -0.1 642,351 - GFF1777 0.85 +1.2 642,351 - GFF1777 0.85 +0.8 642,354 - GFF1777 0.85 +0.4 642,440 + +0.8 642,440 + +0.3 642,441 - -0.1 642,441 - +0.5 642,841 - GFF1778 0.12 -0.2 642,841 - GFF1778 0.12 -1.5 642,961 - GFF1778 0.18 -0.1 643,118 - GFF1778 0.25 -2.6 643,231 + GFF1778 0.31 -1.2 643,231 + GFF1778 0.31 -0.1 643,255 + GFF1778 0.32 -1.2 643,256 - GFF1778 0.32 -2.1 643,327 + GFF1778 0.35 -1.1 643,327 + GFF1778 0.35 -0.6 643,327 + GFF1778 0.35 -1.6 643,327 + GFF1778 0.35 -0.8 643,328 - GFF1778 0.35 -0.5 643,328 - GFF1778 0.35 -0.5 643,414 + GFF1778 0.39 -2.0 643,414 + GFF1778 0.39 +0.5 643,414 + GFF1778 0.39 +0.1 643,414 + GFF1778 0.39 -1.5 643,415 - GFF1778 0.39 -1.6
Or see this region's nucleotide sequence