Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1710

Experiment: Ying_AminoAcid20 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1708 and GFF1709 are separated by 11 nucleotidesGFF1709 and GFF1710 are separated by 18 nucleotidesGFF1710 and GFF1711 are separated by 35 nucleotides GFF1708 - Homoserine/homoserine lactone efflux protein, at 563,324 to 563,965 GFF1708 GFF1709 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 563,977 to 564,885 GFF1709 GFF1710 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 564,904 to 565,824 GFF1710 GFF1711 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 565,860 to 567,878 GFF1711 Position (kb) 564 565 566Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 563.940 kb on + strandat 563.940 kb on + strandat 563.940 kb on + strandat 563.940 kb on + strandat 563.940 kb on + strandat 563.941 kb on - strandat 563.941 kb on - strandat 563.941 kb on - strandat 563.941 kb on - strandat 563.941 kb on - strandat 563.941 kb on - strandat 563.941 kb on - strandat 563.941 kb on - strandat 564.050 kb on + strandat 564.050 kb on + strandat 564.050 kb on + strandat 564.050 kb on + strandat 564.050 kb on + strandat 564.050 kb on + strandat 564.050 kb on + strandat 564.051 kb on - strandat 564.116 kb on + strand, within GFF1709at 564.116 kb on + strand, within GFF1709at 564.116 kb on + strand, within GFF1709at 564.116 kb on + strand, within GFF1709at 564.117 kb on - strand, within GFF1709at 564.117 kb on - strand, within GFF1709at 564.161 kb on + strand, within GFF1709at 564.251 kb on + strand, within GFF1709at 564.251 kb on + strand, within GFF1709at 564.252 kb on - strand, within GFF1709at 564.252 kb on - strand, within GFF1709at 564.252 kb on - strand, within GFF1709at 564.252 kb on - strand, within GFF1709at 564.290 kb on + strand, within GFF1709at 564.405 kb on - strand, within GFF1709at 564.405 kb on - strand, within GFF1709at 564.405 kb on - strand, within GFF1709at 564.438 kb on - strand, within GFF1709at 564.626 kb on + strand, within GFF1709at 564.626 kb on + strand, within GFF1709at 564.626 kb on + strand, within GFF1709at 564.737 kb on + strand, within GFF1709at 564.737 kb on + strand, within GFF1709at 564.737 kb on + strand, within GFF1709at 564.737 kb on + strand, within GFF1709at 564.737 kb on + strand, within GFF1709at 564.737 kb on + strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.738 kb on - strand, within GFF1709at 564.909 kb on - strandat 564.909 kb on - strandat 565.181 kb on + strand, within GFF1710at 565.181 kb on + strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.182 kb on - strand, within GFF1710at 565.460 kb on + strand, within GFF1710at 565.493 kb on + strand, within GFF1710at 565.493 kb on + strand, within GFF1710at 565.494 kb on - strand, within GFF1710at 565.494 kb on - strand, within GFF1710at 565.494 kb on - strand, within GFF1710at 565.538 kb on + strand, within GFF1710at 565.538 kb on + strand, within GFF1710at 565.538 kb on + strand, within GFF1710at 565.538 kb on + strand, within GFF1710at 565.539 kb on - strand, within GFF1710at 565.539 kb on - strand, within GFF1710at 565.539 kb on - strand, within GFF1710at 565.539 kb on - strand, within GFF1710at 565.836 kb on - strandat 565.836 kb on - strandat 565.918 kb on + strandat 565.919 kb on - strandat 565.919 kb on - strandat 565.919 kb on - strandat 566.308 kb on + strand, within GFF1711at 566.308 kb on + strand, within GFF1711at 566.308 kb on + strand, within GFF1711at 566.308 kb on + strand, within GFF1711at 566.309 kb on - strand, within GFF1711at 566.309 kb on - strand, within GFF1711at 566.309 kb on - strand, within GFF1711at 566.309 kb on - strand, within GFF1711at 566.309 kb on - strand, within GFF1711at 566.341 kb on + strand, within GFF1711at 566.342 kb on - strand, within GFF1711at 566.695 kb on + strand, within GFF1711at 566.695 kb on + strand, within GFF1711at 566.695 kb on + strand, within GFF1711at 566.696 kb on - strand, within GFF1711at 566.782 kb on + strand, within GFF1711

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
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563,940 + -1.0
563,940 + -0.5
563,940 + -0.1
563,940 + +2.0
563,940 + +0.5
563,941 - -0.1
563,941 - +0.0
563,941 - +0.1
563,941 - -0.6
563,941 - -0.6
563,941 - -0.5
563,941 - +0.1
563,941 - -0.8
564,050 + -1.4
564,050 + -0.8
564,050 + -1.4
564,050 + -0.4
564,050 + +2.1
564,050 + -1.6
564,050 + -1.8
564,051 - -1.3
564,116 + GFF1709 0.15 -0.1
564,116 + GFF1709 0.15 -0.6
564,116 + GFF1709 0.15 -1.9
564,116 + GFF1709 0.15 +0.1
564,117 - GFF1709 0.15 +0.5
564,117 - GFF1709 0.15 +0.0
564,161 + GFF1709 0.20 -0.6
564,251 + GFF1709 0.30 -0.5
564,251 + GFF1709 0.30 -0.7
564,252 - GFF1709 0.30 +0.4
564,252 - GFF1709 0.30 -0.6
564,252 - GFF1709 0.30 -0.8
564,252 - GFF1709 0.30 -0.8
564,290 + GFF1709 0.34 -0.5
564,405 - GFF1709 0.47 -0.4
564,405 - GFF1709 0.47 -0.6
564,405 - GFF1709 0.47 -0.6
564,438 - GFF1709 0.51 +0.1
564,626 + GFF1709 0.71 -1.9
564,626 + GFF1709 0.71 -0.6
564,626 + GFF1709 0.71 -2.1
564,737 + GFF1709 0.84 +0.1
564,737 + GFF1709 0.84 -0.9
564,737 + GFF1709 0.84 -0.6
564,737 + GFF1709 0.84 +0.1
564,737 + GFF1709 0.84 -0.5
564,737 + GFF1709 0.84 -0.2
564,738 - GFF1709 0.84 -0.9
564,738 - GFF1709 0.84 +0.1
564,738 - GFF1709 0.84 -0.7
564,738 - GFF1709 0.84 -0.9
564,738 - GFF1709 0.84 -1.2
564,738 - GFF1709 0.84 -1.6
564,738 - GFF1709 0.84 -0.4
564,738 - GFF1709 0.84 +0.2
564,738 - GFF1709 0.84 -0.5
564,738 - GFF1709 0.84 -0.6
564,909 - -0.5
564,909 - -0.3
565,181 + GFF1710 0.30 -0.6
565,181 + GFF1710 0.30 -0.7
565,182 - GFF1710 0.30 -0.2
565,182 - GFF1710 0.30 -0.1
565,182 - GFF1710 0.30 -1.0
565,182 - GFF1710 0.30 -0.9
565,182 - GFF1710 0.30 +0.6
565,182 - GFF1710 0.30 -1.8
565,182 - GFF1710 0.30 +0.4
565,182 - GFF1710 0.30 -2.4
565,182 - GFF1710 0.30 +0.0
565,182 - GFF1710 0.30 +1.3
565,182 - GFF1710 0.30 +0.4
565,460 + GFF1710 0.60 +0.2
565,493 + GFF1710 0.64 +0.5
565,493 + GFF1710 0.64 +0.6
565,494 - GFF1710 0.64 -0.2
565,494 - GFF1710 0.64 -0.5
565,494 - GFF1710 0.64 +0.1
565,538 + GFF1710 0.69 +0.3
565,538 + GFF1710 0.69 -0.7
565,538 + GFF1710 0.69 -0.5
565,538 + GFF1710 0.69 -1.0
565,539 - GFF1710 0.69 +0.0
565,539 - GFF1710 0.69 -0.4
565,539 - GFF1710 0.69 +0.2
565,539 - GFF1710 0.69 +0.0
565,836 - -0.7
565,836 - +0.7
565,918 + -0.4
565,919 - -3.3
565,919 - -0.5
565,919 - -0.4
566,308 + GFF1711 0.22 -1.5
566,308 + GFF1711 0.22 -1.0
566,308 + GFF1711 0.22 -0.6
566,308 + GFF1711 0.22 -1.1
566,309 - GFF1711 0.22 -1.2
566,309 - GFF1711 0.22 -1.1
566,309 - GFF1711 0.22 -0.9
566,309 - GFF1711 0.22 -0.4
566,309 - GFF1711 0.22 -0.0
566,341 + GFF1711 0.24 -2.1
566,342 - GFF1711 0.24 -1.2
566,695 + GFF1711 0.41 -0.5
566,695 + GFF1711 0.41 -2.0
566,695 + GFF1711 0.41 -1.5
566,696 - GFF1711 0.41 -0.9
566,782 + GFF1711 0.46 -1.2

Or see this region's nucleotide sequence