Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1665 and GFF1666 are separated by 3 nucleotides GFF1666 and GFF1667 are separated by 74 nucleotides GFF1667 and GFF1668 are separated by 13 nucleotides GFF1668 and GFF1669 overlap by 1 nucleotides GFF1669 and GFF1670 overlap by 4 nucleotides
GFF1665 - Holliday junction DNA helicase RuvB, at 521,300 to 522,352
GFF1665
GFF1666 - Holliday junction DNA helicase RuvA, at 522,356 to 522,934
GFF1666
GFF1667 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 523,009 to 523,947
GFF1667
GFF1668 - hypothetical protein, at 523,961 to 524,347
GFF1668
GFF1669 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 524,347 to 524,805
GFF1669
GFF1670 - D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1), at 524,802 to 525,245
GFF1670
Position (kb) 523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 522.754 kb on - strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.829 kb on - strand, within GFF1666 at 522.829 kb on - strand, within GFF1666 at 522.829 kb on - strand, within GFF1666 at 522.914 kb on - strand at 522.929 kb on + strand at 522.930 kb on - strand at 523.156 kb on + strand, within GFF1667 at 523.156 kb on + strand, within GFF1667 at 523.157 kb on - strand, within GFF1667 at 523.369 kb on + strand, within GFF1667 at 523.369 kb on + strand, within GFF1667 at 523.369 kb on + strand, within GFF1667 at 523.369 kb on + strand, within GFF1667 at 523.369 kb on + strand, within GFF1667 at 523.370 kb on - strand, within GFF1667 at 523.370 kb on - strand, within GFF1667 at 523.370 kb on - strand, within GFF1667 at 523.370 kb on - strand, within GFF1667 at 523.370 kb on - strand, within GFF1667 at 523.505 kb on - strand, within GFF1667 at 523.505 kb on - strand, within GFF1667 at 523.505 kb on - strand, within GFF1667 at 523.519 kb on + strand, within GFF1667 at 523.531 kb on + strand, within GFF1667 at 523.879 kb on + strand at 523.879 kb on + strand at 523.880 kb on - strand at 524.076 kb on - strand, within GFF1668 at 524.076 kb on - strand, within GFF1668 at 524.111 kb on + strand, within GFF1668 at 524.112 kb on - strand, within GFF1668 at 524.243 kb on + strand, within GFF1668 at 524.244 kb on - strand, within GFF1668 at 524.244 kb on - strand, within GFF1668 at 524.797 kb on + strand at 524.797 kb on + strand at 524.798 kb on - strand at 524.804 kb on - strand at 524.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 522,754 - GFF1666 0.69 -1.8 522,828 + GFF1666 0.82 -1.3 522,828 + GFF1666 0.82 -1.8 522,828 + GFF1666 0.82 +0.0 522,828 + GFF1666 0.82 +0.0 522,828 + GFF1666 0.82 -2.3 522,829 - GFF1666 0.82 +0.0 522,829 - GFF1666 0.82 -1.6 522,829 - GFF1666 0.82 -1.3 522,914 - -1.0 522,929 + -1.3 522,930 - -3.4 523,156 + GFF1667 0.16 -0.2 523,156 + GFF1667 0.16 -0.5 523,157 - GFF1667 0.16 -0.1 523,369 + GFF1667 0.38 -0.2 523,369 + GFF1667 0.38 +0.2 523,369 + GFF1667 0.38 +0.4 523,369 + GFF1667 0.38 +0.8 523,369 + GFF1667 0.38 -0.2 523,370 - GFF1667 0.38 +0.5 523,370 - GFF1667 0.38 +0.4 523,370 - GFF1667 0.38 +0.6 523,370 - GFF1667 0.38 -0.2 523,370 - GFF1667 0.38 -0.8 523,505 - GFF1667 0.53 +0.1 523,505 - GFF1667 0.53 -0.1 523,505 - GFF1667 0.53 +0.8 523,519 + GFF1667 0.54 +0.3 523,531 + GFF1667 0.56 +0.4 523,879 + +0.0 523,879 + -0.7 523,880 - -0.3 524,076 - GFF1668 0.30 -0.4 524,076 - GFF1668 0.30 +1.1 524,111 + GFF1668 0.39 -1.2 524,112 - GFF1668 0.39 -0.6 524,243 + GFF1668 0.73 -0.3 524,244 - GFF1668 0.73 -0.6 524,244 - GFF1668 0.73 +0.0 524,797 + -0.5 524,797 + +0.1 524,798 - +0.8 524,804 - +0.2 524,804 - +0.4
Or see this region's nucleotide sequence