Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1589 and GFF1590 are separated by 172 nucleotides GFF1590 and GFF1591 are separated by 98 nucleotides
GFF1589 - (Y14336) putative extracellular protein containing predicted 35aa signal peptide, at 444,014 to 444,988
GFF1589
GFF1590 - Transcriptional regulator, AraC family, at 445,161 to 446,120
GFF1590
GFF1591 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 446,219 to 447,259
GFF1591
Position (kb) 445
446
447 Strain fitness (log2 ratio) -2
-1
0
1 at 444.307 kb on - strand, within GFF1589 at 444.468 kb on + strand, within GFF1589 at 444.469 kb on - strand, within GFF1589 at 444.531 kb on + strand, within GFF1589 at 444.531 kb on + strand, within GFF1589 at 444.531 kb on + strand, within GFF1589 at 445.057 kb on + strand at 445.065 kb on - strand at 445.086 kb on - strand at 445.183 kb on + strand at 445.246 kb on + strand at 445.331 kb on - strand, within GFF1590 at 445.331 kb on - strand, within GFF1590 at 446.222 kb on + strand at 446.222 kb on + strand at 446.222 kb on + strand at 446.223 kb on - strand at 446.223 kb on - strand at 446.223 kb on - strand at 446.223 kb on - strand at 446.223 kb on - strand at 446.264 kb on + strand at 446.265 kb on - strand at 446.531 kb on + strand, within GFF1591 at 446.730 kb on - strand, within GFF1591 at 446.730 kb on - strand, within GFF1591 at 446.772 kb on + strand, within GFF1591 at 446.942 kb on + strand, within GFF1591 at 446.943 kb on - strand, within GFF1591 at 446.943 kb on - strand, within GFF1591 at 447.029 kb on + strand, within GFF1591 at 447.029 kb on + strand, within GFF1591 at 447.030 kb on - strand, within GFF1591
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 444,307 - GFF1589 0.30 -0.0 444,468 + GFF1589 0.47 -0.0 444,469 - GFF1589 0.47 -1.2 444,531 + GFF1589 0.53 -0.4 444,531 + GFF1589 0.53 -0.1 444,531 + GFF1589 0.53 -0.2 445,057 + -0.6 445,065 - +0.0 445,086 - -0.8 445,183 + -0.1 445,246 + -0.2 445,331 - GFF1590 0.18 -0.6 445,331 - GFF1590 0.18 -0.2 446,222 + -2.3 446,222 + +0.0 446,222 + -0.2 446,223 - -0.5 446,223 - +0.8 446,223 - +0.7 446,223 - -0.0 446,223 - +0.0 446,264 + +0.3 446,265 - -0.4 446,531 + GFF1591 0.30 +1.0 446,730 - GFF1591 0.49 +0.8 446,730 - GFF1591 0.49 +0.2 446,772 + GFF1591 0.53 -0.1 446,942 + GFF1591 0.69 +0.3 446,943 - GFF1591 0.70 -0.2 446,943 - GFF1591 0.70 -0.2 447,029 + GFF1591 0.78 -0.2 447,029 + GFF1591 0.78 -0.5 447,030 - GFF1591 0.78 +0.3
Or see this region's nucleotide sequence