Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1420 and GFF1421 are separated by 56 nucleotides GFF1421 and GFF1422 are separated by 12 nucleotides GFF1422 and GFF1423 are separated by 16 nucleotides GFF1423 and GFF1424 are separated by 11 nucleotides GFF1424 and GFF1425 are separated by 61 nucleotides
GFF1420 - hypothetical protein, at 278,722 to 278,952
GFF1420
GFF1421 - hypothetical protein, at 279,009 to 279,407
GFF1421
GFF1422 - Lactoylglutathione lyase and related lyases, at 279,420 to 279,818
GFF1422
GFF1423 - hypothetical protein, at 279,835 to 280,122
GFF1423
GFF1424 - L-lysine permease, at 280,134 to 280,772
GFF1424
GFF1425 - hypothetical protein, at 280,834 to 281,205
GFF1425
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.303 kb on + strand, within GFF1421 at 279.303 kb on + strand, within GFF1421 at 279.304 kb on - strand, within GFF1421 at 279.304 kb on - strand, within GFF1421 at 279.402 kb on + strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.549 kb on + strand, within GFF1422 at 279.549 kb on + strand, within GFF1422 at 279.550 kb on - strand, within GFF1422 at 279.550 kb on - strand, within GFF1422 at 279.748 kb on - strand, within GFF1422 at 279.854 kb on + strand at 280.010 kb on + strand, within GFF1423 at 280.011 kb on - strand, within GFF1423 at 280.201 kb on + strand, within GFF1424 at 280.201 kb on + strand, within GFF1424 at 280.201 kb on + strand, within GFF1424 at 280.202 kb on - strand, within GFF1424 at 280.202 kb on - strand, within GFF1424 at 280.202 kb on - strand, within GFF1424 at 280.202 kb on - strand, within GFF1424 at 280.202 kb on - strand, within GFF1424 at 280.202 kb on - strand, within GFF1424 at 280.381 kb on + strand, within GFF1424 at 280.381 kb on + strand, within GFF1424 at 280.381 kb on + strand, within GFF1424 at 280.382 kb on - strand, within GFF1424 at 280.382 kb on - strand, within GFF1424 at 280.516 kb on + strand, within GFF1424 at 280.516 kb on + strand, within GFF1424 at 280.517 kb on - strand, within GFF1424 at 280.517 kb on - strand, within GFF1424 at 280.517 kb on - strand, within GFF1424 at 280.517 kb on - strand, within GFF1424 at 280.526 kb on - strand, within GFF1424 at 280.526 kb on - strand, within GFF1424 at 280.526 kb on - strand, within GFF1424 at 280.555 kb on + strand, within GFF1424 at 280.555 kb on + strand, within GFF1424 at 280.555 kb on + strand, within GFF1424 at 280.556 kb on - strand, within GFF1424 at 280.693 kb on + strand, within GFF1424 at 280.693 kb on + strand, within GFF1424 at 280.693 kb on + strand, within GFF1424 at 280.693 kb on + strand, within GFF1424 at 280.693 kb on + strand, within GFF1424 at 280.694 kb on - strand, within GFF1424 at 280.694 kb on - strand, within GFF1424 at 280.809 kb on + strand at 280.810 kb on - strand at 280.810 kb on - strand at 280.810 kb on - strand at 280.810 kb on - strand at 280.810 kb on - strand at 280.997 kb on + strand, within GFF1425 at 281.108 kb on + strand, within GFF1425 at 281.108 kb on + strand, within GFF1425 at 281.108 kb on + strand, within GFF1425 at 281.108 kb on + strand, within GFF1425 at 281.109 kb on - strand, within GFF1425 at 281.109 kb on - strand, within GFF1425 at 281.109 kb on - strand, within GFF1425 at 281.109 kb on - strand, within GFF1425
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 279,303 + GFF1421 0.74 -0.2 279,303 + GFF1421 0.74 -0.0 279,304 - GFF1421 0.74 -0.0 279,304 - GFF1421 0.74 -0.0 279,402 + -0.6 279,403 - +0.8 279,403 - -0.9 279,403 - -0.2 279,403 - -0.7 279,403 - -0.3 279,549 + GFF1422 0.32 +0.0 279,549 + GFF1422 0.32 -0.7 279,550 - GFF1422 0.33 -0.0 279,550 - GFF1422 0.33 -0.6 279,748 - GFF1422 0.82 -0.2 279,854 + +0.8 280,010 + GFF1423 0.61 -0.5 280,011 - GFF1423 0.61 -1.4 280,201 + GFF1424 0.10 +0.6 280,201 + GFF1424 0.10 -0.6 280,201 + GFF1424 0.10 -1.0 280,202 - GFF1424 0.11 -2.5 280,202 - GFF1424 0.11 +0.0 280,202 - GFF1424 0.11 +2.6 280,202 - GFF1424 0.11 -1.8 280,202 - GFF1424 0.11 -0.6 280,202 - GFF1424 0.11 -0.2 280,381 + GFF1424 0.39 -0.1 280,381 + GFF1424 0.39 -0.3 280,381 + GFF1424 0.39 -1.3 280,382 - GFF1424 0.39 +2.6 280,382 - GFF1424 0.39 +0.4 280,516 + GFF1424 0.60 -0.4 280,516 + GFF1424 0.60 +0.2 280,517 - GFF1424 0.60 -0.8 280,517 - GFF1424 0.60 -0.6 280,517 - GFF1424 0.60 -0.4 280,517 - GFF1424 0.60 -0.3 280,526 - GFF1424 0.61 +0.1 280,526 - GFF1424 0.61 -0.0 280,526 - GFF1424 0.61 -0.5 280,555 + GFF1424 0.66 -0.4 280,555 + GFF1424 0.66 -2.0 280,555 + GFF1424 0.66 +0.1 280,556 - GFF1424 0.66 +0.7 280,693 + GFF1424 0.87 +0.3 280,693 + GFF1424 0.87 +0.1 280,693 + GFF1424 0.87 -0.3 280,693 + GFF1424 0.87 -0.0 280,693 + GFF1424 0.87 +0.1 280,694 - GFF1424 0.88 +0.8 280,694 - GFF1424 0.88 +0.0 280,809 + -0.0 280,810 - -0.3 280,810 - +0.7 280,810 - +1.3 280,810 - +0.1 280,810 - +0.1 280,997 + GFF1425 0.44 +0.6 281,108 + GFF1425 0.74 -0.6 281,108 + GFF1425 0.74 -0.0 281,108 + GFF1425 0.74 -1.0 281,108 + GFF1425 0.74 -0.0 281,109 - GFF1425 0.74 +0.4 281,109 - GFF1425 0.74 -0.1 281,109 - GFF1425 0.74 -0.6 281,109 - GFF1425 0.74 +0.9
Or see this region's nucleotide sequence