Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1319

Experiment: Ying_AminoAcid20 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1317 and GFF1318 are separated by 9 nucleotidesGFF1318 and GFF1319 overlap by 4 nucleotidesGFF1319 and GFF1320 are separated by 118 nucleotidesGFF1320 and GFF1321 are separated by 3 nucleotides GFF1317 - YrbA protein, at 168,028 to 168,273 GFF1317 GFF1318 - ABC-type multidrug transport system, permease component, at 168,283 to 169,038 GFF1318 GFF1319 - ABC-type multidrug transport system, ATPase component, at 169,035 to 169,973 GFF1319 GFF1320 - Sulfate transporter/antisigma-factor antagonist STAS, at 170,092 to 170,364 GFF1320 GFF1321 - Uncharacterized ABC transporter, auxiliary component YrbC, at 170,368 to 171,000 GFF1321 Position (kb) 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1at 168.065 kb on + strand, within GFF1317at 168.065 kb on + strand, within GFF1317at 168.065 kb on + strand, within GFF1317at 168.066 kb on - strand, within GFF1317at 168.066 kb on - strand, within GFF1317at 168.066 kb on - strand, within GFF1317at 168.066 kb on - strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.145 kb on - strand, within GFF1317at 168.145 kb on - strand, within GFF1317at 168.145 kb on - strand, within GFF1317at 168.299 kb on + strandat 168.299 kb on + strandat 168.299 kb on + strandat 168.407 kb on + strand, within GFF1318at 168.408 kb on - strand, within GFF1318at 168.428 kb on + strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.488 kb on + strand, within GFF1318at 168.488 kb on + strand, within GFF1318at 168.488 kb on + strand, within GFF1318at 168.488 kb on + strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.729 kb on - strand, within GFF1318at 168.729 kb on - strand, within GFF1318at 168.729 kb on - strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.896 kb on + strand, within GFF1318at 168.897 kb on - strand, within GFF1318at 168.941 kb on + strand, within GFF1318at 168.941 kb on + strand, within GFF1318at 168.941 kb on + strand, within GFF1318at 168.941 kb on + strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 169.014 kb on - strandat 169.014 kb on - strandat 169.014 kb on - strandat 169.014 kb on - strandat 169.014 kb on - strandat 169.014 kb on - strandat 169.387 kb on + strand, within GFF1319at 169.387 kb on + strand, within GFF1319at 169.388 kb on - strand, within GFF1319at 169.751 kb on - strand, within GFF1319at 169.936 kb on + strandat 169.937 kb on - strandat 169.937 kb on - strandat 169.937 kb on - strandat 170.045 kb on + strandat 170.045 kb on + strandat 170.046 kb on - strandat 170.046 kb on - strandat 170.046 kb on - strandat 170.121 kb on - strand, within GFF1320at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.510 kb on + strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.511 kb on - strand, within GFF1321at 170.546 kb on + strand, within GFF1321at 170.601 kb on - strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.675 kb on + strand, within GFF1321at 170.676 kb on - strand, within GFF1321at 170.676 kb on - strand, within GFF1321at 170.676 kb on - strand, within GFF1321at 170.676 kb on - strand, within GFF1321

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
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168,065 + GFF1317 0.15 -0.6
168,065 + GFF1317 0.15 -0.6
168,065 + GFF1317 0.15 -1.8
168,066 - GFF1317 0.15 +1.5
168,066 - GFF1317 0.15 +1.7
168,066 - GFF1317 0.15 +1.0
168,066 - GFF1317 0.15 +0.5
168,144 + GFF1317 0.47 +0.1
168,144 + GFF1317 0.47 -0.0
168,144 + GFF1317 0.47 -1.1
168,144 + GFF1317 0.47 -0.0
168,144 + GFF1317 0.47 +0.2
168,144 + GFF1317 0.47 +1.7
168,145 - GFF1317 0.48 -0.5
168,145 - GFF1317 0.48 -0.3
168,145 - GFF1317 0.48 -0.4
168,299 + +0.7
168,299 + -0.6
168,299 + +0.4
168,407 + GFF1318 0.16 +0.5
168,408 - GFF1318 0.17 +0.9
168,428 + GFF1318 0.19 -0.2
168,429 - GFF1318 0.19 -0.1
168,429 - GFF1318 0.19 -0.3
168,429 - GFF1318 0.19 +1.3
168,429 - GFF1318 0.19 -0.0
168,429 - GFF1318 0.19 -0.0
168,488 + GFF1318 0.27 -0.2
168,488 + GFF1318 0.27 -0.3
168,488 + GFF1318 0.27 -1.0
168,488 + GFF1318 0.27 -0.0
168,489 - GFF1318 0.27 +0.3
168,489 - GFF1318 0.27 -0.0
168,489 - GFF1318 0.27 +1.4
168,489 - GFF1318 0.27 -0.2
168,489 - GFF1318 0.27 -0.7
168,728 + GFF1318 0.59 +1.6
168,728 + GFF1318 0.59 -0.5
168,728 + GFF1318 0.59 +0.3
168,728 + GFF1318 0.59 -0.1
168,728 + GFF1318 0.59 +0.6
168,729 - GFF1318 0.59 -0.5
168,729 - GFF1318 0.59 +0.1
168,729 - GFF1318 0.59 +0.2
168,881 + GFF1318 0.79 -1.3
168,881 + GFF1318 0.79 -0.4
168,881 + GFF1318 0.79 +1.0
168,881 + GFF1318 0.79 -0.6
168,881 + GFF1318 0.79 +0.2
168,882 - GFF1318 0.79 -0.1
168,882 - GFF1318 0.79 +0.6
168,882 - GFF1318 0.79 -0.1
168,882 - GFF1318 0.79 +0.4
168,882 - GFF1318 0.79 +0.6
168,882 - GFF1318 0.79 -0.4
168,896 + GFF1318 0.81 -0.1
168,897 - GFF1318 0.81 +0.1
168,941 + GFF1318 0.87 +0.2
168,941 + GFF1318 0.87 -1.4
168,941 + GFF1318 0.87 +0.1
168,941 + GFF1318 0.87 -0.2
168,942 - GFF1318 0.87 -0.1
168,942 - GFF1318 0.87 +0.7
168,942 - GFF1318 0.87 -0.9
168,942 - GFF1318 0.87 +0.2
168,942 - GFF1318 0.87 -0.6
169,014 - +0.7
169,014 - -2.8
169,014 - +1.0
169,014 - +0.6
169,014 - +1.0
169,014 - +1.0
169,387 + GFF1319 0.37 -0.9
169,387 + GFF1319 0.37 -0.2
169,388 - GFF1319 0.38 +0.8
169,751 - GFF1319 0.76 -1.2
169,936 + -0.8
169,937 - -0.6
169,937 - -1.2
169,937 - +0.4
170,045 + +0.9
170,045 + +0.0
170,046 - -0.8
170,046 - -0.4
170,046 - +0.5
170,121 - GFF1320 0.11 -1.2
170,510 + GFF1321 0.22 -0.1
170,510 + GFF1321 0.22 +0.5
170,510 + GFF1321 0.22 -0.6
170,510 + GFF1321 0.22 -0.0
170,510 + GFF1321 0.22 -1.1
170,510 + GFF1321 0.22 -0.8
170,510 + GFF1321 0.22 +0.7
170,510 + GFF1321 0.22 -0.4
170,510 + GFF1321 0.22 -0.4
170,510 + GFF1321 0.22 +0.4
170,510 + GFF1321 0.22 -1.6
170,510 + GFF1321 0.22 -0.4
170,510 + GFF1321 0.22 +0.6
170,511 - GFF1321 0.23 -0.6
170,511 - GFF1321 0.23 -0.5
170,511 - GFF1321 0.23 -2.0
170,511 - GFF1321 0.23 -0.9
170,511 - GFF1321 0.23 -0.5
170,511 - GFF1321 0.23 -0.3
170,511 - GFF1321 0.23 -0.7
170,511 - GFF1321 0.23 -0.1
170,546 + GFF1321 0.28 -0.4
170,601 - GFF1321 0.37 -0.3
170,675 + GFF1321 0.48 +0.2
170,675 + GFF1321 0.48 -1.1
170,675 + GFF1321 0.48 -1.1
170,675 + GFF1321 0.48 -0.8
170,675 + GFF1321 0.48 -0.6
170,675 + GFF1321 0.48 -0.3
170,675 + GFF1321 0.48 +0.2
170,675 + GFF1321 0.48 -0.4
170,676 - GFF1321 0.49 +0.7
170,676 - GFF1321 0.49 +0.2
170,676 - GFF1321 0.49 +0.6
170,676 - GFF1321 0.49 +0.6

Or see this region's nucleotide sequence