Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1213

Experiment: Ying_AminoAcid20 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1211 and GFF1212 are separated by 59 nucleotidesGFF1212 and GFF1213 are separated by 12 nucleotidesGFF1213 and GFF1214 overlap by 4 nucleotides GFF1211 - Sulfate permease, at 75,000 to 76,643 GFF1211 GFF1212 - FIG01197990: hypothetical protein, at 76,703 to 76,915 GFF1212 GFF1213 - Segregation and condensation protein A, at 76,928 to 77,776 GFF1213 GFF1214 - L-aspartate oxidase (EC 1.4.3.16), at 77,773 to 79,371 GFF1214 Position (kb) 76 77 78Strain fitness (log2 ratio) -1 0 1 2at 76.113 kb on + strand, within GFF1211at 76.113 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.374 kb on + strand, within GFF1211at 76.375 kb on - strand, within GFF1211at 76.375 kb on - strand, within GFF1211at 76.375 kb on - strand, within GFF1211at 76.384 kb on - strand, within GFF1211at 76.889 kb on + strand, within GFF1212at 77.762 kb on + strandat 77.762 kb on + strandat 77.763 kb on - strandat 77.763 kb on - strandat 78.301 kb on + strand, within GFF1214at 78.301 kb on + strand, within GFF1214at 78.301 kb on + strand, within GFF1214at 78.301 kb on + strand, within GFF1214at 78.349 kb on + strand, within GFF1214at 78.349 kb on + strand, within GFF1214at 78.349 kb on + strand, within GFF1214at 78.349 kb on + strand, within GFF1214at 78.349 kb on + strand, within GFF1214at 78.349 kb on + strand, within GFF1214at 78.349 kb on + strand, within GFF1214at 78.350 kb on - strand, within GFF1214at 78.350 kb on - strand, within GFF1214at 78.350 kb on - strand, within GFF1214at 78.350 kb on - strand, within GFF1214at 78.350 kb on - strand, within GFF1214at 78.350 kb on - strand, within GFF1214at 78.351 kb on + strand, within GFF1214at 78.352 kb on - strand, within GFF1214at 78.352 kb on - strand, within GFF1214at 78.385 kb on + strand, within GFF1214at 78.385 kb on + strand, within GFF1214at 78.386 kb on - strand, within GFF1214at 78.386 kb on - strand, within GFF1214at 78.386 kb on - strand, within GFF1214at 78.391 kb on + strand, within GFF1214at 78.391 kb on + strand, within GFF1214at 78.391 kb on + strand, within GFF1214at 78.391 kb on + strand, within GFF1214at 78.391 kb on + strand, within GFF1214at 78.391 kb on + strand, within GFF1214at 78.392 kb on - strand, within GFF1214at 78.392 kb on - strand, within GFF1214at 78.499 kb on + strand, within GFF1214at 78.499 kb on + strand, within GFF1214at 78.499 kb on + strand, within GFF1214at 78.499 kb on + strand, within GFF1214at 78.500 kb on - strand, within GFF1214at 78.500 kb on - strand, within GFF1214

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
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76,113 + GFF1211 0.68 +0.5
76,113 + GFF1211 0.68 +0.5
76,374 + GFF1211 0.84 +0.2
76,374 + GFF1211 0.84 +1.6
76,374 + GFF1211 0.84 -0.1
76,374 + GFF1211 0.84 +0.1
76,374 + GFF1211 0.84 -0.1
76,374 + GFF1211 0.84 +1.2
76,374 + GFF1211 0.84 -0.4
76,374 + GFF1211 0.84 -0.4
76,374 + GFF1211 0.84 -0.3
76,374 + GFF1211 0.84 -0.9
76,375 - GFF1211 0.84 +0.2
76,375 - GFF1211 0.84 -0.4
76,375 - GFF1211 0.84 -0.6
76,384 - GFF1211 0.84 +2.0
76,889 + GFF1212 0.87 -0.6
77,762 + +0.1
77,762 + +1.0
77,763 - -0.2
77,763 - -0.0
78,301 + GFF1214 0.33 +2.0
78,301 + GFF1214 0.33 -0.0
78,301 + GFF1214 0.33 +1.3
78,301 + GFF1214 0.33 +0.1
78,349 + GFF1214 0.36 +0.2
78,349 + GFF1214 0.36 +0.5
78,349 + GFF1214 0.36 +0.2
78,349 + GFF1214 0.36 -0.2
78,349 + GFF1214 0.36 +0.3
78,349 + GFF1214 0.36 -1.2
78,349 + GFF1214 0.36 -0.2
78,350 - GFF1214 0.36 -0.3
78,350 - GFF1214 0.36 -0.4
78,350 - GFF1214 0.36 +0.2
78,350 - GFF1214 0.36 +1.6
78,350 - GFF1214 0.36 +0.5
78,350 - GFF1214 0.36 -0.1
78,351 + GFF1214 0.36 +0.3
78,352 - GFF1214 0.36 -0.0
78,352 - GFF1214 0.36 -0.9
78,385 + GFF1214 0.38 +0.1
78,385 + GFF1214 0.38 +0.1
78,386 - GFF1214 0.38 +0.2
78,386 - GFF1214 0.38 -1.2
78,386 - GFF1214 0.38 +0.3
78,391 + GFF1214 0.39 +0.5
78,391 + GFF1214 0.39 -0.0
78,391 + GFF1214 0.39 -0.2
78,391 + GFF1214 0.39 +0.7
78,391 + GFF1214 0.39 -0.0
78,391 + GFF1214 0.39 -1.0
78,392 - GFF1214 0.39 -0.5
78,392 - GFF1214 0.39 +0.7
78,499 + GFF1214 0.45 +0.5
78,499 + GFF1214 0.45 -0.5
78,499 + GFF1214 0.45 -0.0
78,499 + GFF1214 0.45 +0.6
78,500 - GFF1214 0.45 +1.0
78,500 - GFF1214 0.45 +0.2

Or see this region's nucleotide sequence