Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1160 and GFF1161 are separated by 27 nucleotides GFF1161 and GFF1162 are separated by 12 nucleotides
GFF1160 - Salicylate hydroxylase (EC 1.14.13.1), at 15,986 to 17,131
GFF1160
GFF1161 - Tricarboxylate transport protein TctC, at 17,159 to 18,124
GFF1161
GFF1162 - hypothetical protein, at 18,137 to 19,129
GFF1162
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.350 kb on - strand, within GFF1160 at 16.736 kb on + strand, within GFF1160 at 16.736 kb on + strand, within GFF1160 at 16.805 kb on + strand, within GFF1160 at 16.805 kb on + strand, within GFF1160 at 16.806 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 16.980 kb on - strand, within GFF1160 at 17.072 kb on + strand at 17.072 kb on + strand at 17.072 kb on + strand at 17.073 kb on - strand at 17.073 kb on - strand at 17.465 kb on + strand, within GFF1161 at 17.465 kb on + strand, within GFF1161 at 17.466 kb on - strand, within GFF1161 at 17.483 kb on + strand, within GFF1161 at 17.483 kb on + strand, within GFF1161 at 17.484 kb on - strand, within GFF1161 at 17.507 kb on + strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.508 kb on - strand, within GFF1161 at 17.529 kb on - strand, within GFF1161 at 17.582 kb on + strand, within GFF1161 at 17.582 kb on + strand, within GFF1161 at 17.583 kb on - strand, within GFF1161 at 17.583 kb on - strand, within GFF1161 at 17.621 kb on + strand, within GFF1161 at 17.622 kb on - strand, within GFF1161 at 17.622 kb on - strand, within GFF1161 at 17.622 kb on - strand, within GFF1161 at 18.014 kb on + strand, within GFF1161 at 18.014 kb on + strand, within GFF1161 at 18.015 kb on - strand, within GFF1161 at 18.032 kb on + strand at 18.032 kb on + strand at 18.032 kb on + strand at 18.032 kb on + strand at 18.033 kb on - strand at 18.033 kb on - strand at 18.422 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.446 kb on + strand, within GFF1162 at 18.447 kb on - strand, within GFF1162 at 18.599 kb on + strand, within GFF1162 at 18.680 kb on + strand, within GFF1162 at 18.681 kb on - strand, within GFF1162 at 18.681 kb on - strand, within GFF1162 at 18.681 kb on - strand, within GFF1162 at 18.681 kb on - strand, within GFF1162 at 18.813 kb on - strand, within GFF1162 at 18.813 kb on - strand, within GFF1162 at 19.055 kb on + strand at 19.055 kb on + strand at 19.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 16,350 - GFF1160 0.32 -1.5 16,736 + GFF1160 0.65 -0.3 16,736 + GFF1160 0.65 +1.0 16,805 + GFF1160 0.71 -1.3 16,805 + GFF1160 0.71 +0.5 16,806 - GFF1160 0.72 +0.1 16,980 - GFF1160 0.87 -0.0 16,980 - GFF1160 0.87 +0.1 16,980 - GFF1160 0.87 +0.7 16,980 - GFF1160 0.87 -0.7 16,980 - GFF1160 0.87 +0.4 17,072 + +0.6 17,072 + +1.0 17,072 + -0.2 17,073 - +0.2 17,073 - -0.1 17,465 + GFF1161 0.32 +0.8 17,465 + GFF1161 0.32 -0.0 17,466 - GFF1161 0.32 -0.2 17,483 + GFF1161 0.34 -0.3 17,483 + GFF1161 0.34 -0.1 17,484 - GFF1161 0.34 +0.2 17,507 + GFF1161 0.36 +0.1 17,508 - GFF1161 0.36 -1.7 17,508 - GFF1161 0.36 -0.3 17,508 - GFF1161 0.36 +0.8 17,508 - GFF1161 0.36 +0.3 17,508 - GFF1161 0.36 -0.3 17,508 - GFF1161 0.36 +0.7 17,508 - GFF1161 0.36 +0.1 17,529 - GFF1161 0.38 -0.1 17,582 + GFF1161 0.44 +0.6 17,582 + GFF1161 0.44 +0.2 17,583 - GFF1161 0.44 +2.0 17,583 - GFF1161 0.44 +0.8 17,621 + GFF1161 0.48 -0.0 17,622 - GFF1161 0.48 +0.4 17,622 - GFF1161 0.48 -2.0 17,622 - GFF1161 0.48 +0.2 18,014 + GFF1161 0.89 -0.0 18,014 + GFF1161 0.89 +2.6 18,015 - GFF1161 0.89 -0.6 18,032 + +0.1 18,032 + +0.8 18,032 + -1.1 18,032 + +0.1 18,033 - -0.2 18,033 - -0.4 18,422 + GFF1162 0.29 +0.1 18,446 + GFF1162 0.31 +0.1 18,446 + GFF1162 0.31 -0.5 18,446 + GFF1162 0.31 -0.6 18,446 + GFF1162 0.31 -0.2 18,446 + GFF1162 0.31 +0.7 18,446 + GFF1162 0.31 +0.2 18,446 + GFF1162 0.31 +0.2 18,446 + GFF1162 0.31 +0.5 18,446 + GFF1162 0.31 +0.5 18,446 + GFF1162 0.31 -0.5 18,447 - GFF1162 0.31 +1.0 18,599 + GFF1162 0.47 +0.2 18,680 + GFF1162 0.55 -0.1 18,681 - GFF1162 0.55 -0.9 18,681 - GFF1162 0.55 -0.1 18,681 - GFF1162 0.55 +0.3 18,681 - GFF1162 0.55 -0.7 18,813 - GFF1162 0.68 +0.4 18,813 - GFF1162 0.68 -0.4 19,055 + -0.5 19,055 + -0.9 19,056 - -0.0
Or see this region's nucleotide sequence