Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS08060

Experiment: marine_broth_2216 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS08055 and HMPREF1181_RS08060 are separated by 13 nucleotidesHMPREF1181_RS08060 and HMPREF1181_RS08065 are separated by 201 nucleotidesHMPREF1181_RS08065 and HMPREF1181_RS08070 are separated by 86 nucleotides HMPREF1181_RS08055: HMPREF1181_RS08055 - RagB/SusD family nutrient uptake outer membrane protein, at 120,372 to 121,862 _RS08055 HMPREF1181_RS08060: HMPREF1181_RS08060 - TonB-dependent receptor, at 121,876 to 125,004 _RS08060 HMPREF1181_RS08065: HMPREF1181_RS08065 - response regulator, at 125,206 to 125,607 _RS08065 HMPREF1181_RS08070: HMPREF1181_RS08070 - ABC-F family ATP-binding cassette domain-containing protein, at 125,694 to 127,328 _RS08070 Position (kb) 121 122 123 124 125 126Strain fitness (log2 ratio) -2 -1 0 1 2at 120.946 kb on + strand, within HMPREF1181_RS08055at 120.971 kb on + strand, within HMPREF1181_RS08055at 120.974 kb on - strand, within HMPREF1181_RS08055at 120.976 kb on + strand, within HMPREF1181_RS08055at 120.977 kb on - strand, within HMPREF1181_RS08055at 120.986 kb on - strand, within HMPREF1181_RS08055at 121.063 kb on + strand, within HMPREF1181_RS08055at 121.064 kb on - strand, within HMPREF1181_RS08055at 121.064 kb on - strand, within HMPREF1181_RS08055at 121.182 kb on + strand, within HMPREF1181_RS08055at 121.182 kb on + strand, within HMPREF1181_RS08055at 121.222 kb on + strand, within HMPREF1181_RS08055at 121.271 kb on + strand, within HMPREF1181_RS08055at 121.271 kb on + strand, within HMPREF1181_RS08055at 121.271 kb on + strand, within HMPREF1181_RS08055at 121.272 kb on - strand, within HMPREF1181_RS08055at 121.273 kb on + strand, within HMPREF1181_RS08055at 121.274 kb on - strand, within HMPREF1181_RS08055at 121.457 kb on + strand, within HMPREF1181_RS08055at 121.461 kb on - strand, within HMPREF1181_RS08055at 121.516 kb on + strand, within HMPREF1181_RS08055at 121.572 kb on - strand, within HMPREF1181_RS08055at 121.579 kb on + strand, within HMPREF1181_RS08055at 121.598 kb on - strand, within HMPREF1181_RS08055at 121.598 kb on - strand, within HMPREF1181_RS08055at 121.673 kb on - strand, within HMPREF1181_RS08055at 121.673 kb on - strand, within HMPREF1181_RS08055at 121.676 kb on + strand, within HMPREF1181_RS08055at 121.676 kb on + strand, within HMPREF1181_RS08055at 121.697 kb on + strand, within HMPREF1181_RS08055at 121.697 kb on + strand, within HMPREF1181_RS08055at 121.718 kb on + strandat 121.719 kb on - strandat 121.759 kb on - strandat 121.770 kb on - strandat 121.818 kb on + strandat 121.928 kb on + strandat 121.929 kb on - strandat 122.209 kb on - strand, within HMPREF1181_RS08060at 122.266 kb on + strand, within HMPREF1181_RS08060at 122.266 kb on + strand, within HMPREF1181_RS08060at 122.267 kb on - strand, within HMPREF1181_RS08060at 122.274 kb on - strand, within HMPREF1181_RS08060at 122.274 kb on - strand, within HMPREF1181_RS08060at 122.281 kb on + strand, within HMPREF1181_RS08060at 122.288 kb on + strand, within HMPREF1181_RS08060at 122.305 kb on + strand, within HMPREF1181_RS08060at 122.321 kb on + strand, within HMPREF1181_RS08060at 122.378 kb on + strand, within HMPREF1181_RS08060at 122.378 kb on + strand, within HMPREF1181_RS08060at 122.382 kb on - strand, within HMPREF1181_RS08060at 122.382 kb on - strand, within HMPREF1181_RS08060at 122.382 kb on - strand, within HMPREF1181_RS08060at 122.382 kb on - strand, within HMPREF1181_RS08060at 122.385 kb on - strand, within HMPREF1181_RS08060at 122.454 kb on + strand, within HMPREF1181_RS08060at 122.454 kb on + strand, within HMPREF1181_RS08060at 122.455 kb on - strand, within HMPREF1181_RS08060at 122.455 kb on - strand, within HMPREF1181_RS08060at 122.619 kb on + strand, within HMPREF1181_RS08060at 122.645 kb on - strand, within HMPREF1181_RS08060at 122.645 kb on - strand, within HMPREF1181_RS08060at 122.645 kb on - strand, within HMPREF1181_RS08060at 122.695 kb on + strand, within HMPREF1181_RS08060at 122.715 kb on + strand, within HMPREF1181_RS08060at 122.748 kb on - strand, within HMPREF1181_RS08060at 122.827 kb on + strand, within HMPREF1181_RS08060at 122.827 kb on + strand, within HMPREF1181_RS08060at 122.942 kb on + strand, within HMPREF1181_RS08060at 122.943 kb on - strand, within HMPREF1181_RS08060at 122.943 kb on - strand, within HMPREF1181_RS08060at 123.041 kb on - strand, within HMPREF1181_RS08060at 123.156 kb on - strand, within HMPREF1181_RS08060at 123.174 kb on - strand, within HMPREF1181_RS08060at 123.174 kb on - strand, within HMPREF1181_RS08060at 123.178 kb on + strand, within HMPREF1181_RS08060at 123.178 kb on + strand, within HMPREF1181_RS08060at 123.303 kb on - strand, within HMPREF1181_RS08060at 123.390 kb on + strand, within HMPREF1181_RS08060at 123.398 kb on + strand, within HMPREF1181_RS08060at 123.398 kb on + strand, within HMPREF1181_RS08060at 123.399 kb on - strand, within HMPREF1181_RS08060at 123.465 kb on + strand, within HMPREF1181_RS08060at 123.470 kb on + strand, within HMPREF1181_RS08060at 123.471 kb on - strand, within HMPREF1181_RS08060at 123.471 kb on - strand, within HMPREF1181_RS08060at 123.565 kb on - strand, within HMPREF1181_RS08060at 123.577 kb on - strand, within HMPREF1181_RS08060at 123.648 kb on - strand, within HMPREF1181_RS08060at 123.702 kb on - strand, within HMPREF1181_RS08060at 123.891 kb on + strand, within HMPREF1181_RS08060at 123.892 kb on - strand, within HMPREF1181_RS08060at 123.924 kb on - strand, within HMPREF1181_RS08060at 123.926 kb on + strand, within HMPREF1181_RS08060at 123.927 kb on - strand, within HMPREF1181_RS08060at 124.157 kb on + strand, within HMPREF1181_RS08060at 124.158 kb on - strand, within HMPREF1181_RS08060at 124.158 kb on - strand, within HMPREF1181_RS08060at 124.158 kb on - strand, within HMPREF1181_RS08060at 124.202 kb on + strand, within HMPREF1181_RS08060at 124.321 kb on - strand, within HMPREF1181_RS08060at 124.324 kb on + strand, within HMPREF1181_RS08060at 124.324 kb on + strand, within HMPREF1181_RS08060at 124.324 kb on + strand, within HMPREF1181_RS08060at 124.324 kb on + strand, within HMPREF1181_RS08060at 124.330 kb on - strand, within HMPREF1181_RS08060at 124.402 kb on + strand, within HMPREF1181_RS08060at 124.403 kb on - strand, within HMPREF1181_RS08060at 124.486 kb on - strand, within HMPREF1181_RS08060at 124.507 kb on + strand, within HMPREF1181_RS08060at 124.507 kb on + strand, within HMPREF1181_RS08060at 124.508 kb on - strand, within HMPREF1181_RS08060at 124.508 kb on - strand, within HMPREF1181_RS08060at 124.651 kb on - strand, within HMPREF1181_RS08060at 124.651 kb on - strand, within HMPREF1181_RS08060at 124.653 kb on - strand, within HMPREF1181_RS08060at 124.685 kb on - strand, within HMPREF1181_RS08060at 124.815 kb on + strandat 124.818 kb on - strandat 124.945 kb on + strandat 124.976 kb on - strandat 125.067 kb on - strandat 125.088 kb on - strandat 125.122 kb on - strandat 125.130 kb on + strandat 125.132 kb on + strandat 125.133 kb on - strandat 125.140 kb on + strandat 125.142 kb on + strandat 125.144 kb on + strandat 125.145 kb on - strandat 125.145 kb on - strandat 125.179 kb on + strandat 125.180 kb on - strandat 125.185 kb on + strandat 125.186 kb on - strandat 125.207 kb on + strandat 125.228 kb on + strandat 125.229 kb on - strandat 125.262 kb on + strand, within HMPREF1181_RS08065at 125.263 kb on - strand, within HMPREF1181_RS08065at 125.278 kb on + strand, within HMPREF1181_RS08065at 125.330 kb on + strand, within HMPREF1181_RS08065at 125.331 kb on - strand, within HMPREF1181_RS08065at 125.405 kb on - strand, within HMPREF1181_RS08065at 125.415 kb on + strand, within HMPREF1181_RS08065at 125.497 kb on + strand, within HMPREF1181_RS08065at 125.498 kb on - strand, within HMPREF1181_RS08065at 125.517 kb on + strand, within HMPREF1181_RS08065at 125.528 kb on - strand, within HMPREF1181_RS08065at 125.535 kb on + strand, within HMPREF1181_RS08065at 125.541 kb on + strand, within HMPREF1181_RS08065at 125.541 kb on + strand, within HMPREF1181_RS08065at 125.544 kb on + strand, within HMPREF1181_RS08065at 125.545 kb on - strand, within HMPREF1181_RS08065at 125.618 kb on - strandat 125.618 kb on - strandat 125.618 kb on - strandat 125.653 kb on + strandat 125.653 kb on + strandat 125.654 kb on - strandat 125.692 kb on + strandat 125.752 kb on + strandat 125.752 kb on + strandat 125.761 kb on + strandat 125.821 kb on + strandat 125.821 kb on + strandat 125.895 kb on + strand, within HMPREF1181_RS08070at 125.989 kb on + strand, within HMPREF1181_RS08070

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media
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120,946 + HMPREF1181_RS08055 0.38 -0.2
120,971 + HMPREF1181_RS08055 0.40 +0.4
120,974 - HMPREF1181_RS08055 0.40 +0.1
120,976 + HMPREF1181_RS08055 0.41 -0.7
120,977 - HMPREF1181_RS08055 0.41 -0.6
120,986 - HMPREF1181_RS08055 0.41 -0.4
121,063 + HMPREF1181_RS08055 0.46 -0.2
121,064 - HMPREF1181_RS08055 0.46 -0.2
121,064 - HMPREF1181_RS08055 0.46 -0.7
121,182 + HMPREF1181_RS08055 0.54 -0.6
121,182 + HMPREF1181_RS08055 0.54 +0.4
121,222 + HMPREF1181_RS08055 0.57 -0.5
121,271 + HMPREF1181_RS08055 0.60 +1.1
121,271 + HMPREF1181_RS08055 0.60 +0.1
121,271 + HMPREF1181_RS08055 0.60 +0.7
121,272 - HMPREF1181_RS08055 0.60 -0.2
121,273 + HMPREF1181_RS08055 0.60 -0.9
121,274 - HMPREF1181_RS08055 0.60 -0.5
121,457 + HMPREF1181_RS08055 0.73 -0.2
121,461 - HMPREF1181_RS08055 0.73 +0.3
121,516 + HMPREF1181_RS08055 0.77 -0.3
121,572 - HMPREF1181_RS08055 0.80 -0.6
121,579 + HMPREF1181_RS08055 0.81 -0.5
121,598 - HMPREF1181_RS08055 0.82 -0.8
121,598 - HMPREF1181_RS08055 0.82 -0.3
121,673 - HMPREF1181_RS08055 0.87 +0.4
121,673 - HMPREF1181_RS08055 0.87 -0.6
121,676 + HMPREF1181_RS08055 0.87 +1.2
121,676 + HMPREF1181_RS08055 0.87 +0.2
121,697 + HMPREF1181_RS08055 0.89 +0.3
121,697 + HMPREF1181_RS08055 0.89 -0.3
121,718 + +0.5
121,719 - -0.9
121,759 - -0.4
121,770 - -0.4
121,818 + +0.9
121,928 + -0.3
121,929 - -0.5
122,209 - HMPREF1181_RS08060 0.11 +0.5
122,266 + HMPREF1181_RS08060 0.12 +0.0
122,266 + HMPREF1181_RS08060 0.12 -0.9
122,267 - HMPREF1181_RS08060 0.12 +0.0
122,274 - HMPREF1181_RS08060 0.13 +0.3
122,274 - HMPREF1181_RS08060 0.13 +0.2
122,281 + HMPREF1181_RS08060 0.13 +0.7
122,288 + HMPREF1181_RS08060 0.13 -0.6
122,305 + HMPREF1181_RS08060 0.14 +0.1
122,321 + HMPREF1181_RS08060 0.14 +0.7
122,378 + HMPREF1181_RS08060 0.16 +1.4
122,378 + HMPREF1181_RS08060 0.16 +0.3
122,382 - HMPREF1181_RS08060 0.16 +0.4
122,382 - HMPREF1181_RS08060 0.16 +0.5
122,382 - HMPREF1181_RS08060 0.16 -0.6
122,382 - HMPREF1181_RS08060 0.16 +1.4
122,385 - HMPREF1181_RS08060 0.16 +0.8
122,454 + HMPREF1181_RS08060 0.18 -2.3
122,454 + HMPREF1181_RS08060 0.18 +1.5
122,455 - HMPREF1181_RS08060 0.19 +0.8
122,455 - HMPREF1181_RS08060 0.19 +0.6
122,619 + HMPREF1181_RS08060 0.24 +0.3
122,645 - HMPREF1181_RS08060 0.25 -0.0
122,645 - HMPREF1181_RS08060 0.25 +0.2
122,645 - HMPREF1181_RS08060 0.25 -0.3
122,695 + HMPREF1181_RS08060 0.26 +0.6
122,715 + HMPREF1181_RS08060 0.27 -0.1
122,748 - HMPREF1181_RS08060 0.28 -0.2
122,827 + HMPREF1181_RS08060 0.30 +0.7
122,827 + HMPREF1181_RS08060 0.30 +0.6
122,942 + HMPREF1181_RS08060 0.34 +1.4
122,943 - HMPREF1181_RS08060 0.34 +0.9
122,943 - HMPREF1181_RS08060 0.34 +0.4
123,041 - HMPREF1181_RS08060 0.37 +0.0
123,156 - HMPREF1181_RS08060 0.41 +0.1
123,174 - HMPREF1181_RS08060 0.41 +0.9
123,174 - HMPREF1181_RS08060 0.41 +1.4
123,178 + HMPREF1181_RS08060 0.42 +0.5
123,178 + HMPREF1181_RS08060 0.42 +1.4
123,303 - HMPREF1181_RS08060 0.46 +1.0
123,390 + HMPREF1181_RS08060 0.48 +0.9
123,398 + HMPREF1181_RS08060 0.49 +2.5
123,398 + HMPREF1181_RS08060 0.49 +0.4
123,399 - HMPREF1181_RS08060 0.49 +0.7
123,465 + HMPREF1181_RS08060 0.51 -0.3
123,470 + HMPREF1181_RS08060 0.51 +0.6
123,471 - HMPREF1181_RS08060 0.51 -0.1
123,471 - HMPREF1181_RS08060 0.51 +1.5
123,565 - HMPREF1181_RS08060 0.54 -0.1
123,577 - HMPREF1181_RS08060 0.54 +2.0
123,648 - HMPREF1181_RS08060 0.57 +0.7
123,702 - HMPREF1181_RS08060 0.58 +0.6
123,891 + HMPREF1181_RS08060 0.64 +1.0
123,892 - HMPREF1181_RS08060 0.64 +1.0
123,924 - HMPREF1181_RS08060 0.65 -0.2
123,926 + HMPREF1181_RS08060 0.66 +0.7
123,927 - HMPREF1181_RS08060 0.66 +1.4
124,157 + HMPREF1181_RS08060 0.73 +1.5
124,158 - HMPREF1181_RS08060 0.73 -1.5
124,158 - HMPREF1181_RS08060 0.73 +1.0
124,158 - HMPREF1181_RS08060 0.73 +0.2
124,202 + HMPREF1181_RS08060 0.74 +0.1
124,321 - HMPREF1181_RS08060 0.78 +0.6
124,324 + HMPREF1181_RS08060 0.78 +0.7
124,324 + HMPREF1181_RS08060 0.78 +0.5
124,324 + HMPREF1181_RS08060 0.78 +0.5
124,324 + HMPREF1181_RS08060 0.78 +1.3
124,330 - HMPREF1181_RS08060 0.78 +1.1
124,402 + HMPREF1181_RS08060 0.81 +0.2
124,403 - HMPREF1181_RS08060 0.81 +0.4
124,486 - HMPREF1181_RS08060 0.83 +0.2
124,507 + HMPREF1181_RS08060 0.84 +0.9
124,507 + HMPREF1181_RS08060 0.84 +0.9
124,508 - HMPREF1181_RS08060 0.84 +1.4
124,508 - HMPREF1181_RS08060 0.84 +1.2
124,651 - HMPREF1181_RS08060 0.89 +0.5
124,651 - HMPREF1181_RS08060 0.89 +0.5
124,653 - HMPREF1181_RS08060 0.89 +0.5
124,685 - HMPREF1181_RS08060 0.90 -0.8
124,815 + +1.4
124,818 - +1.0
124,945 + +0.6
124,976 - -0.0
125,067 - +0.2
125,088 - +0.4
125,122 - -0.6
125,130 + -0.4
125,132 + +0.3
125,133 - -0.6
125,140 + +0.6
125,142 + +0.3
125,144 + -1.5
125,145 - -0.2
125,145 - +1.7
125,179 + -1.1
125,180 - -0.1
125,185 + -0.2
125,186 - +0.4
125,207 + -0.8
125,228 + +0.0
125,229 - +0.5
125,262 + HMPREF1181_RS08065 0.14 +0.2
125,263 - HMPREF1181_RS08065 0.14 +0.4
125,278 + HMPREF1181_RS08065 0.18 +1.0
125,330 + HMPREF1181_RS08065 0.31 +0.4
125,331 - HMPREF1181_RS08065 0.31 +2.3
125,405 - HMPREF1181_RS08065 0.50 +0.4
125,415 + HMPREF1181_RS08065 0.52 -1.9
125,497 + HMPREF1181_RS08065 0.72 +1.1
125,498 - HMPREF1181_RS08065 0.73 +0.9
125,517 + HMPREF1181_RS08065 0.77 -1.4
125,528 - HMPREF1181_RS08065 0.80 +1.6
125,535 + HMPREF1181_RS08065 0.82 +0.7
125,541 + HMPREF1181_RS08065 0.83 -1.5
125,541 + HMPREF1181_RS08065 0.83 -0.2
125,544 + HMPREF1181_RS08065 0.84 -0.3
125,545 - HMPREF1181_RS08065 0.84 -0.0
125,618 - +0.8
125,618 - -0.3
125,618 - -0.1
125,653 + +0.0
125,653 + +0.2
125,654 - +0.2
125,692 + +0.1
125,752 + -0.9
125,752 + +0.8
125,761 + -0.8
125,821 + -0.8
125,821 + -0.5
125,895 + HMPREF1181_RS08070 0.12 +0.2
125,989 + HMPREF1181_RS08070 0.18 +0.0

Or see this region's nucleotide sequence