Experiment: marine_broth_2216 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS06560 and HMPREF1181_RS06565 overlap by 26 nucleotides HMPREF1181_RS06565 and HMPREF1181_RS06570 are separated by 210 nucleotides
HMPREF1181_RS06560: HMPREF1181_RS06560 - prephenate dehydratase, at 672,249 to 673,097
_RS06560
HMPREF1181_RS06565: HMPREF1181_RS06565 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 673,072 to 674,253
_RS06565
HMPREF1181_RS06570: HMPREF1181_RS06570 - bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II, at 674,464 to 675,531
_RS06570
Position (kb) 673
674
675 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 672.075 kb on + strand at 672.079 kb on - strand at 672.151 kb on + strand at 672.170 kb on + strand at 672.170 kb on + strand at 672.171 kb on - strand at 672.175 kb on - strand at 672.175 kb on - strand at 672.177 kb on + strand at 672.178 kb on - strand at 672.178 kb on - strand at 672.179 kb on + strand at 672.182 kb on - strand at 672.182 kb on - strand at 672.278 kb on - strand at 672.329 kb on - strand at 672.335 kb on + strand, within HMPREF1181_RS06560 at 672.336 kb on - strand, within HMPREF1181_RS06560 at 672.416 kb on + strand, within HMPREF1181_RS06560 at 672.744 kb on - strand, within HMPREF1181_RS06560 at 672.892 kb on + strand, within HMPREF1181_RS06560 at 672.970 kb on - strand, within HMPREF1181_RS06560 at 672.982 kb on + strand, within HMPREF1181_RS06560 at 672.988 kb on + strand, within HMPREF1181_RS06560 at 673.012 kb on - strand, within HMPREF1181_RS06560 at 673.023 kb on - strand at 673.056 kb on - strand at 673.071 kb on + strand at 673.092 kb on - strand at 673.244 kb on + strand, within HMPREF1181_RS06565 at 673.423 kb on - strand, within HMPREF1181_RS06565 at 673.483 kb on + strand, within HMPREF1181_RS06565 at 673.484 kb on - strand, within HMPREF1181_RS06565 at 673.484 kb on - strand, within HMPREF1181_RS06565 at 673.520 kb on + strand, within HMPREF1181_RS06565 at 673.526 kb on - strand, within HMPREF1181_RS06565 at 673.526 kb on - strand, within HMPREF1181_RS06565 at 673.584 kb on + strand, within HMPREF1181_RS06565 at 673.616 kb on - strand, within HMPREF1181_RS06565 at 673.888 kb on - strand, within HMPREF1181_RS06565 at 673.892 kb on + strand, within HMPREF1181_RS06565 at 673.893 kb on - strand, within HMPREF1181_RS06565 at 674.031 kb on + strand, within HMPREF1181_RS06565 at 674.051 kb on + strand, within HMPREF1181_RS06565 at 674.135 kb on + strand at 674.180 kb on - strand at 674.326 kb on - strand at 674.341 kb on - strand at 674.341 kb on - strand at 674.448 kb on + strand at 674.464 kb on - strand at 674.562 kb on + strand at 674.595 kb on + strand, within HMPREF1181_RS06570 at 674.596 kb on - strand, within HMPREF1181_RS06570 at 674.604 kb on - strand, within HMPREF1181_RS06570 at 674.604 kb on - strand, within HMPREF1181_RS06570 at 674.658 kb on - strand, within HMPREF1181_RS06570 at 674.658 kb on - strand, within HMPREF1181_RS06570 at 674.683 kb on - strand, within HMPREF1181_RS06570 at 674.710 kb on + strand, within HMPREF1181_RS06570 at 674.710 kb on + strand, within HMPREF1181_RS06570 at 674.710 kb on + strand, within HMPREF1181_RS06570 at 674.710 kb on + strand, within HMPREF1181_RS06570 at 674.711 kb on - strand, within HMPREF1181_RS06570 at 674.711 kb on - strand, within HMPREF1181_RS06570 at 674.746 kb on + strand, within HMPREF1181_RS06570 at 674.768 kb on + strand, within HMPREF1181_RS06570 at 674.768 kb on + strand, within HMPREF1181_RS06570 at 674.772 kb on + strand, within HMPREF1181_RS06570 at 674.773 kb on - strand, within HMPREF1181_RS06570 at 674.775 kb on - strand, within HMPREF1181_RS06570 at 674.825 kb on + strand, within HMPREF1181_RS06570 at 674.876 kb on + strand, within HMPREF1181_RS06570 at 674.900 kb on + strand, within HMPREF1181_RS06570 at 674.972 kb on - strand, within HMPREF1181_RS06570 at 675.010 kb on - strand, within HMPREF1181_RS06570 at 675.206 kb on + strand, within HMPREF1181_RS06570 at 675.207 kb on - strand, within HMPREF1181_RS06570
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media remove 672,075 + -0.5 672,079 - -1.3 672,151 + +0.3 672,170 + +1.3 672,170 + -0.4 672,171 - +0.6 672,175 - -0.3 672,175 - -0.2 672,177 + -0.8 672,178 - +1.6 672,178 - +0.4 672,179 + -0.2 672,182 - -0.4 672,182 - -1.0 672,278 - -1.0 672,329 - +0.5 672,335 + HMPREF1181_RS06560 0.10 -0.6 672,336 - HMPREF1181_RS06560 0.10 -0.4 672,416 + HMPREF1181_RS06560 0.20 -0.2 672,744 - HMPREF1181_RS06560 0.58 -0.0 672,892 + HMPREF1181_RS06560 0.76 -1.5 672,970 - HMPREF1181_RS06560 0.85 +0.4 672,982 + HMPREF1181_RS06560 0.86 +0.7 672,988 + HMPREF1181_RS06560 0.87 -0.8 673,012 - HMPREF1181_RS06560 0.90 -0.7 673,023 - -0.7 673,056 - +0.3 673,071 + -0.2 673,092 - +0.1 673,244 + HMPREF1181_RS06565 0.15 -1.0 673,423 - HMPREF1181_RS06565 0.30 +2.5 673,483 + HMPREF1181_RS06565 0.35 -1.2 673,484 - HMPREF1181_RS06565 0.35 +0.2 673,484 - HMPREF1181_RS06565 0.35 +0.2 673,520 + HMPREF1181_RS06565 0.38 +1.7 673,526 - HMPREF1181_RS06565 0.38 +0.1 673,526 - HMPREF1181_RS06565 0.38 -0.7 673,584 + HMPREF1181_RS06565 0.43 +0.7 673,616 - HMPREF1181_RS06565 0.46 +0.4 673,888 - HMPREF1181_RS06565 0.69 +0.7 673,892 + HMPREF1181_RS06565 0.69 +1.1 673,893 - HMPREF1181_RS06565 0.69 -1.3 674,031 + HMPREF1181_RS06565 0.81 -0.1 674,051 + HMPREF1181_RS06565 0.83 +0.8 674,135 + -2.0 674,180 - -0.1 674,326 - +0.8 674,341 - +0.6 674,341 - +0.5 674,448 + -1.0 674,464 - -1.6 674,562 + +0.7 674,595 + HMPREF1181_RS06570 0.12 -0.2 674,596 - HMPREF1181_RS06570 0.12 -0.4 674,604 - HMPREF1181_RS06570 0.13 +0.5 674,604 - HMPREF1181_RS06570 0.13 +1.4 674,658 - HMPREF1181_RS06570 0.18 -0.3 674,658 - HMPREF1181_RS06570 0.18 -0.3 674,683 - HMPREF1181_RS06570 0.21 +0.0 674,710 + HMPREF1181_RS06570 0.23 +0.5 674,710 + HMPREF1181_RS06570 0.23 -0.4 674,710 + HMPREF1181_RS06570 0.23 -0.7 674,710 + HMPREF1181_RS06570 0.23 -0.1 674,711 - HMPREF1181_RS06570 0.23 +0.4 674,711 - HMPREF1181_RS06570 0.23 +0.1 674,746 + HMPREF1181_RS06570 0.26 -0.8 674,768 + HMPREF1181_RS06570 0.28 +0.3 674,768 + HMPREF1181_RS06570 0.28 -0.3 674,772 + HMPREF1181_RS06570 0.29 -2.8 674,773 - HMPREF1181_RS06570 0.29 -0.1 674,775 - HMPREF1181_RS06570 0.29 -0.2 674,825 + HMPREF1181_RS06570 0.34 -0.1 674,876 + HMPREF1181_RS06570 0.39 -0.3 674,900 + HMPREF1181_RS06570 0.41 +0.3 674,972 - HMPREF1181_RS06570 0.48 -0.2 675,010 - HMPREF1181_RS06570 0.51 +0.4 675,206 + HMPREF1181_RS06570 0.69 -1.4 675,207 - HMPREF1181_RS06570 0.70 -0.3
Or see this region's nucleotide sequence