Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF874 and GFF875 are separated by 51 nucleotides GFF875 and GFF876 are separated by 45 nucleotides
GFF874 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 597,619 to 599,238
GFF874
GFF875 - Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 599,290 to 601,422
GFF875
GFF876 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 601,468 to 602,676
GFF876
Position (kb) 599
600
601
602 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 598.499 kb on + strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.637 kb on + strand, within GFF874 at 598.637 kb on + strand, within GFF874 at 598.638 kb on - strand, within GFF874 at 598.658 kb on + strand, within GFF874 at 599.291 kb on + strand at 599.291 kb on + strand at 599.291 kb on + strand at 599.292 kb on - strand at 599.654 kb on + strand, within GFF875 at 599.654 kb on + strand, within GFF875 at 599.738 kb on + strand, within GFF875 at 599.739 kb on - strand, within GFF875 at 600.488 kb on + strand, within GFF875 at 600.488 kb on + strand, within GFF875 at 601.089 kb on - strand, within GFF875 at 601.409 kb on + strand at 601.409 kb on + strand at 601.409 kb on + strand at 601.709 kb on + strand, within GFF876 at 601.986 kb on - strand, within GFF876 at 602.171 kb on + strand, within GFF876 at 602.171 kb on + strand, within GFF876 at 602.171 kb on + strand, within GFF876 at 602.202 kb on - strand, within GFF876 at 602.246 kb on + strand, within GFF876 at 602.246 kb on + strand, within GFF876 at 602.246 kb on + strand, within GFF876
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 598,499 + GFF874 0.54 +1.1 598,499 + GFF874 0.54 -1.0 598,499 + GFF874 0.54 -0.3 598,499 + GFF874 0.54 +0.6 598,637 + GFF874 0.63 -0.1 598,637 + GFF874 0.63 +0.1 598,638 - GFF874 0.63 +0.8 598,658 + GFF874 0.64 -0.8 599,291 + -0.3 599,291 + -0.3 599,291 + +0.7 599,292 - -2.3 599,654 + GFF875 0.17 -0.0 599,654 + GFF875 0.17 -0.9 599,738 + GFF875 0.21 +0.7 599,739 - GFF875 0.21 +0.3 600,488 + GFF875 0.56 +1.2 600,488 + GFF875 0.56 +0.9 601,089 - GFF875 0.84 +0.1 601,409 + -0.2 601,409 + +2.9 601,409 + +0.7 601,709 + GFF876 0.20 -0.6 601,986 - GFF876 0.43 -0.1 602,171 + GFF876 0.58 -0.6 602,171 + GFF876 0.58 -0.1 602,171 + GFF876 0.58 -0.4 602,202 - GFF876 0.61 -0.8 602,246 + GFF876 0.64 +0.2 602,246 + GFF876 0.64 +0.3 602,246 + GFF876 0.64 +1.4
Or see this region's nucleotide sequence