Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF832 and GFF833 are separated by 95 nucleotides
GFF832 - hypothetical protein, at 530,548 to 531,810
GFF832
GFF833 - hypothetical protein, at 531,906 to 532,022
GFF833
Position (kb) 530
531
532 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 529.562 kb on + strand at 529.562 kb on + strand at 529.563 kb on - strand at 529.563 kb on - strand at 529.563 kb on - strand at 529.599 kb on + strand at 529.600 kb on - strand at 529.608 kb on + strand at 529.608 kb on + strand at 529.608 kb on + strand at 529.609 kb on - strand at 529.609 kb on - strand at 529.609 kb on - strand at 529.642 kb on + strand at 529.642 kb on + strand at 529.642 kb on + strand at 529.642 kb on + strand at 529.643 kb on - strand at 529.661 kb on - strand at 529.685 kb on + strand at 529.686 kb on - strand at 529.686 kb on - strand at 529.717 kb on + strand at 529.717 kb on + strand at 529.825 kb on - strand at 529.914 kb on + strand at 529.965 kb on + strand at 529.965 kb on + strand at 529.965 kb on + strand at 529.966 kb on - strand at 529.966 kb on - strand at 529.966 kb on - strand at 529.969 kb on + strand at 529.969 kb on + strand at 529.970 kb on - strand at 530.016 kb on - strand at 530.016 kb on - strand at 530.016 kb on - strand at 530.016 kb on - strand at 530.016 kb on - strand at 530.039 kb on + strand at 530.040 kb on - strand at 530.235 kb on + strand at 530.235 kb on + strand at 530.235 kb on + strand at 530.236 kb on - strand at 530.295 kb on + strand at 530.295 kb on + strand at 530.295 kb on + strand at 530.295 kb on + strand at 530.295 kb on + strand at 530.296 kb on - strand at 530.296 kb on - strand at 530.383 kb on - strand at 530.427 kb on + strand at 530.427 kb on + strand at 530.428 kb on - strand at 530.428 kb on - strand at 530.435 kb on + strand at 530.436 kb on - strand at 530.444 kb on + strand at 530.445 kb on - strand at 530.453 kb on - strand at 530.453 kb on - strand at 530.453 kb on - strand at 530.671 kb on - strand at 530.766 kb on - strand, within GFF832 at 530.812 kb on - strand, within GFF832 at 531.000 kb on + strand, within GFF832 at 531.001 kb on - strand, within GFF832 at 531.013 kb on + strand, within GFF832 at 531.013 kb on + strand, within GFF832 at 531.013 kb on + strand, within GFF832 at 531.013 kb on + strand, within GFF832 at 531.014 kb on - strand, within GFF832 at 531.214 kb on + strand, within GFF832 at 531.214 kb on + strand, within GFF832 at 531.215 kb on - strand, within GFF832 at 531.215 kb on - strand, within GFF832 at 531.259 kb on + strand, within GFF832 at 531.259 kb on + strand, within GFF832 at 531.259 kb on + strand, within GFF832 at 531.260 kb on - strand, within GFF832 at 531.260 kb on - strand, within GFF832 at 531.299 kb on - strand, within GFF832 at 531.616 kb on + strand, within GFF832 at 531.630 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.636 kb on - strand, within GFF832 at 531.687 kb on + strand at 531.767 kb on + strand at 531.767 kb on + strand at 531.767 kb on + strand at 531.768 kb on - strand at 531.806 kb on + strand at 531.806 kb on + strand at 531.807 kb on - strand at 531.807 kb on - strand at 531.807 kb on - strand at 531.855 kb on + strand at 531.855 kb on + strand at 531.858 kb on + strand at 531.859 kb on - strand at 531.986 kb on - strand, within GFF833 at 531.986 kb on - strand, within GFF833 at 531.986 kb on - strand, within GFF833 at 532.396 kb on - strand at 532.539 kb on + strand at 532.686 kb on + strand at 532.686 kb on + strand at 532.686 kb on + strand at 532.686 kb on + strand at 532.687 kb on - strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.781 kb on - strand at 532.796 kb on + strand at 532.796 kb on + strand at 532.796 kb on + strand at 532.797 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 529,562 + +0.3 529,562 + -0.4 529,563 - -0.7 529,563 - -2.7 529,563 - +1.7 529,599 + +1.0 529,600 - -1.5 529,608 + +0.2 529,608 + -0.9 529,608 + -1.0 529,609 - -0.6 529,609 - +0.7 529,609 - -0.1 529,642 + +2.3 529,642 + -0.6 529,642 + -0.2 529,642 + -0.5 529,643 - -0.4 529,661 - +0.3 529,685 + -0.4 529,686 - +0.0 529,686 - -0.7 529,717 + +0.9 529,717 + -1.3 529,825 - -0.3 529,914 + -0.3 529,965 + +0.3 529,965 + +1.3 529,965 + -0.1 529,966 - +1.4 529,966 - -1.1 529,966 - -0.2 529,969 + +0.4 529,969 + -1.3 529,970 - -1.0 530,016 - -0.3 530,016 - +0.9 530,016 - -0.0 530,016 - +0.6 530,016 - -1.7 530,039 + -0.5 530,040 - +0.3 530,235 + -0.8 530,235 + +0.5 530,235 + +1.3 530,236 - +0.1 530,295 + +0.6 530,295 + +0.3 530,295 + -0.2 530,295 + -0.6 530,295 + -0.5 530,296 - +2.1 530,296 - -0.0 530,383 - -0.4 530,427 + +0.8 530,427 + -0.7 530,428 - -0.9 530,428 - +0.1 530,435 + +1.3 530,436 - +1.3 530,444 + +1.0 530,445 - -1.0 530,453 - -3.1 530,453 - +0.3 530,453 - -1.4 530,671 - +0.2 530,766 - GFF832 0.17 +0.0 530,812 - GFF832 0.21 -0.3 531,000 + GFF832 0.36 -0.7 531,001 - GFF832 0.36 -1.1 531,013 + GFF832 0.37 -1.3 531,013 + GFF832 0.37 +1.1 531,013 + GFF832 0.37 +0.8 531,013 + GFF832 0.37 +1.1 531,014 - GFF832 0.37 +0.3 531,214 + GFF832 0.53 -0.2 531,214 + GFF832 0.53 +0.8 531,215 - GFF832 0.53 -0.5 531,215 - GFF832 0.53 +0.0 531,259 + GFF832 0.56 +0.7 531,259 + GFF832 0.56 -0.5 531,259 + GFF832 0.56 -0.3 531,260 - GFF832 0.56 -0.7 531,260 - GFF832 0.56 +0.4 531,299 - GFF832 0.59 -0.3 531,616 + GFF832 0.85 -0.2 531,630 + GFF832 0.86 -0.5 531,635 + GFF832 0.86 -1.5 531,635 + GFF832 0.86 +1.9 531,635 + GFF832 0.86 +1.2 531,635 + GFF832 0.86 +0.0 531,635 + GFF832 0.86 -0.1 531,635 + GFF832 0.86 +1.3 531,636 - GFF832 0.86 -0.2 531,687 + -0.2 531,767 + -0.8 531,767 + +0.0 531,767 + -0.5 531,768 - +0.6 531,806 + +0.0 531,806 + +0.7 531,807 - +0.5 531,807 - -0.3 531,807 - +0.7 531,855 + +0.7 531,855 + -0.4 531,858 + -0.1 531,859 - -1.5 531,986 - GFF833 0.68 -0.3 531,986 - GFF833 0.68 -0.0 531,986 - GFF833 0.68 -0.9 532,396 - -0.2 532,539 + -0.7 532,686 + +1.3 532,686 + +0.0 532,686 + -0.1 532,686 + -0.3 532,687 - -0.3 532,780 + +0.3 532,780 + -0.3 532,780 + -1.3 532,780 + +0.5 532,780 + -2.4 532,781 - +1.3 532,796 + +0.5 532,796 + +1.4 532,796 + +0.3 532,797 - -0.1
Or see this region's nucleotide sequence