Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF804 and GFF805 are separated by 9 nucleotides GFF805 and GFF806 are separated by 6 nucleotides
GFF804 - FIG00347536: hypothetical protein, at 499,126 to 500,454
GFF804
GFF805 - ABC transporter ATP-binding protein, at 500,464 to 501,465
GFF805
GFF806 - Homoserine dehydrogenase (EC 1.1.1.3), at 501,472 to 502,602
GFF806
Position (kb) 500
501
502 Strain fitness (log2 ratio) -2
-1
0
1
2 at 500.224 kb on + strand, within GFF804 at 500.224 kb on - strand, within GFF804 at 500.225 kb on - strand, within GFF804 at 500.225 kb on - strand, within GFF804 at 500.225 kb on - strand, within GFF804 at 500.332 kb on + strand at 500.333 kb on - strand at 500.452 kb on + strand at 500.471 kb on - strand at 500.582 kb on - strand, within GFF805 at 500.587 kb on + strand, within GFF805 at 500.638 kb on + strand, within GFF805 at 500.639 kb on - strand, within GFF805 at 500.789 kb on - strand, within GFF805 at 500.815 kb on + strand, within GFF805 at 501.232 kb on + strand, within GFF805 at 501.233 kb on - strand, within GFF805 at 501.352 kb on + strand, within GFF805 at 501.352 kb on + strand, within GFF805 at 501.463 kb on + strand at 501.497 kb on + strand at 501.497 kb on + strand at 501.628 kb on + strand, within GFF806 at 501.717 kb on - strand, within GFF806 at 501.744 kb on - strand, within GFF806 at 501.890 kb on + strand, within GFF806 at 501.891 kb on - strand, within GFF806 at 502.217 kb on + strand, within GFF806 at 502.217 kb on + strand, within GFF806 at 502.289 kb on + strand, within GFF806 at 502.289 kb on + strand, within GFF806 at 502.289 kb on + strand, within GFF806 at 502.290 kb on - strand, within GFF806
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 500,224 + GFF804 0.83 +0.5 500,224 - GFF804 0.83 -1.1 500,225 - GFF804 0.83 -0.3 500,225 - GFF804 0.83 -1.1 500,225 - GFF804 0.83 -0.4 500,332 + -1.3 500,333 - +0.1 500,452 + +2.5 500,471 - -0.3 500,582 - GFF805 0.12 +0.1 500,587 + GFF805 0.12 +0.7 500,638 + GFF805 0.17 +0.8 500,639 - GFF805 0.17 -0.7 500,789 - GFF805 0.32 -0.6 500,815 + GFF805 0.35 -1.0 501,232 + GFF805 0.77 -1.0 501,233 - GFF805 0.77 -1.0 501,352 + GFF805 0.89 +0.7 501,352 + GFF805 0.89 +0.8 501,463 + -1.1 501,497 + +1.0 501,497 + -2.1 501,628 + GFF806 0.14 -0.5 501,717 - GFF806 0.22 +0.1 501,744 - GFF806 0.24 +0.3 501,890 + GFF806 0.37 -0.4 501,891 - GFF806 0.37 -0.3 502,217 + GFF806 0.66 -1.5 502,217 + GFF806 0.66 -1.0 502,289 + GFF806 0.72 -0.3 502,289 + GFF806 0.72 -0.2 502,289 + GFF806 0.72 -1.3 502,290 - GFF806 0.72 -0.3
Or see this region's nucleotide sequence