Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF756 and GFF757 are separated by 27 nucleotides GFF757 and GFF758 are separated by 76 nucleotides
GFF756 - Quinone oxidoreductase (EC 1.6.5.5), at 446,595 to 447,590
GFF756
GFF757 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase, at 447,618 to 448,766
GFF757
GFF758 - Sodium-dependent phosphate transporter, at 448,843 to 450,495
GFF758
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 446.743 kb on - strand, within GFF756 at 446.743 kb on - strand, within GFF756 at 446.743 kb on - strand, within GFF756 at 446.761 kb on - strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.887 kb on - strand, within GFF756 at 446.887 kb on - strand, within GFF756 at 447.186 kb on + strand, within GFF756 at 447.186 kb on + strand, within GFF756 at 447.252 kb on + strand, within GFF756 at 447.253 kb on - strand, within GFF756 at 447.253 kb on - strand, within GFF756 at 447.253 kb on - strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.523 kb on - strand at 447.961 kb on + strand, within GFF757 at 447.962 kb on - strand, within GFF757 at 447.962 kb on - strand, within GFF757 at 448.028 kb on - strand, within GFF757 at 448.048 kb on + strand, within GFF757 at 448.048 kb on + strand, within GFF757 at 448.049 kb on - strand, within GFF757 at 448.049 kb on - strand, within GFF757 at 448.049 kb on - strand, within GFF757 at 448.306 kb on + strand, within GFF757 at 448.306 kb on + strand, within GFF757 at 448.307 kb on - strand, within GFF757 at 448.511 kb on - strand, within GFF757 at 448.511 kb on - strand, within GFF757 at 448.574 kb on - strand, within GFF757 at 448.627 kb on + strand, within GFF757 at 448.682 kb on - strand at 448.709 kb on - strand at 448.709 kb on - strand at 448.806 kb on + strand at 448.806 kb on + strand at 448.806 kb on + strand at 448.807 kb on - strand at 449.049 kb on - strand, within GFF758 at 449.357 kb on + strand, within GFF758 at 449.357 kb on + strand, within GFF758 at 449.358 kb on - strand, within GFF758 at 449.358 kb on - strand, within GFF758 at 449.360 kb on + strand, within GFF758 at 449.360 kb on + strand, within GFF758 at 449.360 kb on + strand, within GFF758 at 449.361 kb on - strand, within GFF758 at 449.361 kb on - strand, within GFF758 at 449.361 kb on - strand, within GFF758 at 449.375 kb on + strand, within GFF758 at 449.375 kb on + strand, within GFF758 at 449.376 kb on - strand, within GFF758 at 449.376 kb on - strand, within GFF758 at 449.376 kb on - strand, within GFF758
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 446,743 - GFF756 0.15 +0.1 446,743 - GFF756 0.15 -0.3 446,743 - GFF756 0.15 +0.2 446,761 - GFF756 0.17 +0.8 446,886 + GFF756 0.29 +0.3 446,886 + GFF756 0.29 +0.4 446,886 + GFF756 0.29 -0.9 446,886 + GFF756 0.29 -0.7 446,886 + GFF756 0.29 +0.7 446,886 + GFF756 0.29 +0.1 446,886 + GFF756 0.29 -0.9 446,887 - GFF756 0.29 -0.0 446,887 - GFF756 0.29 +1.2 447,186 + GFF756 0.59 +3.2 447,186 + GFF756 0.59 +0.1 447,252 + GFF756 0.66 -0.5 447,253 - GFF756 0.66 -1.3 447,253 - GFF756 0.66 -0.7 447,253 - GFF756 0.66 +0.1 447,390 + GFF756 0.80 +1.3 447,390 + GFF756 0.80 +0.8 447,390 + GFF756 0.80 -0.5 447,390 + GFF756 0.80 -0.8 447,390 + GFF756 0.80 -0.5 447,391 - GFF756 0.80 -0.7 447,391 - GFF756 0.80 +1.6 447,391 - GFF756 0.80 +0.5 447,391 - GFF756 0.80 -0.1 447,523 - -2.1 447,961 + GFF757 0.30 -0.7 447,962 - GFF757 0.30 -0.5 447,962 - GFF757 0.30 +1.9 448,028 - GFF757 0.36 -0.5 448,048 + GFF757 0.37 +1.3 448,048 + GFF757 0.37 -1.7 448,049 - GFF757 0.38 +1.0 448,049 - GFF757 0.38 -0.7 448,049 - GFF757 0.38 -1.4 448,306 + GFF757 0.60 -0.6 448,306 + GFF757 0.60 +1.7 448,307 - GFF757 0.60 -0.9 448,511 - GFF757 0.78 -1.0 448,511 - GFF757 0.78 -0.8 448,574 - GFF757 0.83 -0.6 448,627 + GFF757 0.88 -0.0 448,682 - +1.0 448,709 - -1.3 448,709 - +2.4 448,806 + -0.4 448,806 + -1.2 448,806 + +1.8 448,807 - +0.2 449,049 - GFF758 0.12 -0.2 449,357 + GFF758 0.31 +0.4 449,357 + GFF758 0.31 -1.7 449,358 - GFF758 0.31 +1.3 449,358 - GFF758 0.31 +1.1 449,360 + GFF758 0.31 -0.7 449,360 + GFF758 0.31 +0.5 449,360 + GFF758 0.31 +2.0 449,361 - GFF758 0.31 -0.4 449,361 - GFF758 0.31 +0.3 449,361 - GFF758 0.31 -0.3 449,375 + GFF758 0.32 -0.0 449,375 + GFF758 0.32 +0.1 449,376 - GFF758 0.32 -0.9 449,376 - GFF758 0.32 -0.7 449,376 - GFF758 0.32 -0.1
Or see this region's nucleotide sequence