Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF753 and GFF754 are separated by 202 nucleotides GFF754 and GFF755 are separated by 0 nucleotides
GFF753 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 442,605 to 443,402
GFF753
GFF754 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 443,605 to 445,533
GFF754
GFF755 - Permease of the drug/metabolite transporter (DMT) superfamily, at 445,534 to 446,475
GFF755
Position (kb) 443
444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 443.346 kb on + strand at 443.347 kb on - strand at 444.118 kb on + strand, within GFF754 at 444.118 kb on + strand, within GFF754 at 444.118 kb on + strand, within GFF754 at 444.118 kb on + strand, within GFF754 at 444.118 kb on + strand, within GFF754 at 444.118 kb on + strand, within GFF754 at 444.118 kb on + strand, within GFF754 at 444.119 kb on - strand, within GFF754 at 444.119 kb on - strand, within GFF754 at 444.427 kb on + strand, within GFF754 at 444.442 kb on + strand, within GFF754 at 444.478 kb on + strand, within GFF754 at 444.478 kb on + strand, within GFF754 at 444.479 kb on - strand, within GFF754 at 444.479 kb on - strand, within GFF754 at 444.479 kb on - strand, within GFF754 at 444.480 kb on + strand, within GFF754 at 445.535 kb on + strand at 445.536 kb on - strand at 445.536 kb on - strand at 445.536 kb on - strand at 445.716 kb on - strand, within GFF755 at 445.716 kb on - strand, within GFF755 at 445.745 kb on + strand, within GFF755 at 445.745 kb on + strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.949 kb on + strand, within GFF755 at 445.950 kb on - strand, within GFF755 at 446.108 kb on + strand, within GFF755 at 446.198 kb on + strand, within GFF755 at 446.199 kb on - strand, within GFF755 at 446.199 kb on - strand, within GFF755 at 446.199 kb on - strand, within GFF755 at 446.213 kb on + strand, within GFF755 at 446.213 kb on + strand, within GFF755 at 446.213 kb on + strand, within GFF755 at 446.214 kb on - strand, within GFF755 at 446.214 kb on - strand, within GFF755 at 446.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 443,346 + +0.9 443,347 - -0.3 444,118 + GFF754 0.27 -0.1 444,118 + GFF754 0.27 -0.6 444,118 + GFF754 0.27 +0.6 444,118 + GFF754 0.27 +1.3 444,118 + GFF754 0.27 -1.6 444,118 + GFF754 0.27 -0.0 444,118 + GFF754 0.27 +2.7 444,119 - GFF754 0.27 +1.3 444,119 - GFF754 0.27 -0.7 444,427 + GFF754 0.43 +0.2 444,442 + GFF754 0.43 -0.7 444,478 + GFF754 0.45 -1.0 444,478 + GFF754 0.45 +0.9 444,479 - GFF754 0.45 -1.3 444,479 - GFF754 0.45 +0.5 444,479 - GFF754 0.45 -1.5 444,480 + GFF754 0.45 +0.4 445,535 + -0.5 445,536 - -1.7 445,536 - -0.3 445,536 - +0.1 445,716 - GFF755 0.19 +1.6 445,716 - GFF755 0.19 +0.5 445,745 + GFF755 0.22 +0.0 445,745 + GFF755 0.22 -0.7 445,746 - GFF755 0.23 -1.0 445,746 - GFF755 0.23 +0.3 445,746 - GFF755 0.23 +0.8 445,746 - GFF755 0.23 +1.2 445,949 + GFF755 0.44 +0.3 445,950 - GFF755 0.44 +0.3 446,108 + GFF755 0.61 +2.3 446,198 + GFF755 0.70 -1.0 446,199 - GFF755 0.71 -0.3 446,199 - GFF755 0.71 -0.7 446,199 - GFF755 0.71 +0.3 446,213 + GFF755 0.72 +0.1 446,213 + GFF755 0.72 +1.1 446,213 + GFF755 0.72 +0.4 446,214 - GFF755 0.72 +0.7 446,214 - GFF755 0.72 +0.7 446,488 - -2.1
Or see this region's nucleotide sequence