Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF704 and GFF705 are separated by 30 nucleotides GFF705 and GFF706 are separated by 66 nucleotides
GFF704 - TRAP-type C4-dicarboxylate transport system, large permease component, at 383,127 to 384,425
GFF704
GFF705 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 384,456 to 385,490
GFF705
GFF706 - Tricarboxylate transport protein TctC, at 385,557 to 386,537
GFF706
Position (kb) 384
385
386 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 383.613 kb on + strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.883 kb on + strand, within GFF704 at 383.883 kb on + strand, within GFF704 at 383.884 kb on - strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.421 kb on - strand at 384.543 kb on + strand at 384.543 kb on + strand at 384.543 kb on + strand at 384.543 kb on + strand at 384.544 kb on - strand at 384.544 kb on - strand at 384.555 kb on + strand at 384.663 kb on + strand, within GFF705 at 384.663 kb on + strand, within GFF705 at 384.664 kb on - strand, within GFF705 at 384.664 kb on - strand, within GFF705 at 384.664 kb on - strand, within GFF705 at 384.664 kb on - strand, within GFF705 at 384.792 kb on + strand, within GFF705 at 384.918 kb on + strand, within GFF705 at 385.173 kb on + strand, within GFF705 at 385.173 kb on + strand, within GFF705 at 385.173 kb on + strand, within GFF705 at 385.173 kb on + strand, within GFF705 at 385.174 kb on - strand, within GFF705 at 385.174 kb on - strand, within GFF705 at 385.417 kb on - strand at 385.417 kb on - strand at 385.488 kb on + strand at 385.488 kb on + strand at 385.488 kb on + strand at 385.489 kb on - strand at 385.489 kb on - strand at 385.489 kb on - strand at 385.489 kb on - strand at 385.489 kb on - strand at 385.597 kb on + strand at 385.598 kb on - strand at 385.598 kb on - strand at 385.975 kb on + strand, within GFF706 at 385.975 kb on + strand, within GFF706 at 385.975 kb on + strand, within GFF706 at 385.975 kb on + strand, within GFF706 at 385.975 kb on + strand, within GFF706 at 385.976 kb on - strand, within GFF706 at 385.976 kb on - strand, within GFF706 at 386.062 kb on + strand, within GFF706 at 386.062 kb on + strand, within GFF706 at 386.063 kb on - strand, within GFF706 at 386.063 kb on - strand, within GFF706 at 386.063 kb on - strand, within GFF706 at 386.063 kb on - strand, within GFF706 at 386.063 kb on - strand, within GFF706 at 386.063 kb on - strand, within GFF706 at 386.063 kb on - strand, within GFF706 at 386.213 kb on - strand, within GFF706
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 383,613 + GFF704 0.37 +1.3 383,614 - GFF704 0.37 -0.1 383,614 - GFF704 0.37 +0.1 383,614 - GFF704 0.37 +1.3 383,614 - GFF704 0.37 -0.7 383,614 - GFF704 0.37 -0.6 383,883 + GFF704 0.58 +0.4 383,883 + GFF704 0.58 +1.9 383,884 - GFF704 0.58 -1.0 384,192 + GFF704 0.82 +0.6 384,192 + GFF704 0.82 -0.3 384,192 + GFF704 0.82 +0.3 384,192 + GFF704 0.82 +0.6 384,192 + GFF704 0.82 -0.6 384,192 + GFF704 0.82 -0.3 384,193 - GFF704 0.82 +0.3 384,193 - GFF704 0.82 +1.3 384,193 - GFF704 0.82 +1.1 384,193 - GFF704 0.82 +0.6 384,193 - GFF704 0.82 +0.1 384,421 - -1.6 384,543 + +0.1 384,543 + -0.2 384,543 + -0.3 384,543 + +1.1 384,544 - -0.3 384,544 - -0.6 384,555 + -0.3 384,663 + GFF705 0.20 +1.0 384,663 + GFF705 0.20 -1.3 384,664 - GFF705 0.20 +0.7 384,664 - GFF705 0.20 +1.7 384,664 - GFF705 0.20 -0.8 384,664 - GFF705 0.20 +0.1 384,792 + GFF705 0.32 -1.1 384,918 + GFF705 0.45 -0.2 385,173 + GFF705 0.69 -0.5 385,173 + GFF705 0.69 +0.4 385,173 + GFF705 0.69 -0.2 385,173 + GFF705 0.69 +0.0 385,174 - GFF705 0.69 -0.3 385,174 - GFF705 0.69 +0.4 385,417 - +0.7 385,417 - +0.0 385,488 + -0.3 385,488 + -0.3 385,488 + -1.3 385,489 - -0.8 385,489 - -0.3 385,489 - +2.9 385,489 - +0.1 385,489 - -0.1 385,597 + -0.1 385,598 - -2.4 385,598 - -0.5 385,975 + GFF706 0.43 -0.3 385,975 + GFF706 0.43 -0.5 385,975 + GFF706 0.43 +1.8 385,975 + GFF706 0.43 +0.5 385,975 + GFF706 0.43 +0.7 385,976 - GFF706 0.43 -1.0 385,976 - GFF706 0.43 +1.3 386,062 + GFF706 0.51 -0.2 386,062 + GFF706 0.51 +0.6 386,063 - GFF706 0.52 -0.1 386,063 - GFF706 0.52 +1.0 386,063 - GFF706 0.52 -0.0 386,063 - GFF706 0.52 -0.3 386,063 - GFF706 0.52 -0.2 386,063 - GFF706 0.52 -0.1 386,063 - GFF706 0.52 +0.9 386,213 - GFF706 0.67 -0.4
Or see this region's nucleotide sequence