Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF663 and GFF664 are separated by 52 nucleotides GFF664 and GFF665 are separated by 9 nucleotides GFF665 and GFF666 are separated by 80 nucleotides
GFF663 - Ferric iron ABC transporter, permease protein, at 345,508 to 347,115
GFF663
GFF664 - FIG00932412: hypothetical protein, at 347,168 to 347,611
GFF664
GFF665 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 347,621 to 348,052
GFF665
GFF666 - Fused spore maturation proteins A and B, at 348,133 to 349,425
GFF666
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 346.624 kb on + strand, within GFF663 at 346.624 kb on + strand, within GFF663 at 346.624 kb on + strand, within GFF663 at 346.711 kb on + strand, within GFF663 at 346.712 kb on - strand, within GFF663 at 346.712 kb on - strand, within GFF663 at 346.712 kb on - strand, within GFF663 at 347.002 kb on + strand at 347.114 kb on - strand at 347.158 kb on + strand at 347.158 kb on + strand at 347.159 kb on - strand at 347.298 kb on - strand, within GFF664 at 347.324 kb on + strand, within GFF664 at 347.324 kb on + strand, within GFF664 at 347.324 kb on + strand, within GFF664 at 347.325 kb on - strand, within GFF664 at 347.333 kb on + strand, within GFF664 at 347.375 kb on + strand, within GFF664 at 347.376 kb on - strand, within GFF664 at 347.376 kb on - strand, within GFF664 at 347.376 kb on - strand, within GFF664 at 347.376 kb on - strand, within GFF664 at 347.376 kb on - strand, within GFF664 at 347.540 kb on + strand, within GFF664 at 347.540 kb on + strand, within GFF664 at 347.540 kb on + strand, within GFF664 at 347.540 kb on + strand, within GFF664 at 347.540 kb on + strand, within GFF664 at 347.540 kb on + strand, within GFF664 at 347.541 kb on - strand, within GFF664 at 347.541 kb on - strand, within GFF664 at 347.883 kb on + strand, within GFF665 at 347.883 kb on + strand, within GFF665 at 347.883 kb on + strand, within GFF665 at 347.883 kb on + strand, within GFF665 at 347.883 kb on + strand, within GFF665 at 347.883 kb on + strand, within GFF665 at 347.883 kb on + strand, within GFF665 at 347.884 kb on - strand, within GFF665 at 347.946 kb on + strand, within GFF665 at 347.946 kb on + strand, within GFF665 at 347.947 kb on - strand, within GFF665 at 347.947 kb on - strand, within GFF665 at 347.988 kb on + strand, within GFF665 at 347.989 kb on - strand, within GFF665 at 348.021 kb on + strand at 348.021 kb on + strand at 348.021 kb on + strand at 348.021 kb on + strand at 348.022 kb on - strand at 348.030 kb on + strand at 348.031 kb on - strand at 348.031 kb on - strand at 348.031 kb on - strand at 348.031 kb on - strand at 348.158 kb on + strand at 348.158 kb on + strand at 348.976 kb on + strand, within GFF666 at 348.976 kb on + strand, within GFF666 at 348.977 kb on - strand, within GFF666 at 348.977 kb on - strand, within GFF666 at 349.036 kb on + strand, within GFF666 at 349.036 kb on + strand, within GFF666 at 349.037 kb on - strand, within GFF666 at 349.037 kb on - strand, within GFF666
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 346,624 + GFF663 0.69 -1.6 346,624 + GFF663 0.69 -0.2 346,624 + GFF663 0.69 +1.5 346,711 + GFF663 0.75 +0.3 346,712 - GFF663 0.75 +0.1 346,712 - GFF663 0.75 +0.7 346,712 - GFF663 0.75 +0.3 347,002 + +1.1 347,114 - +1.3 347,158 + +0.8 347,158 + -0.3 347,159 - -0.7 347,298 - GFF664 0.29 +0.5 347,324 + GFF664 0.35 -0.1 347,324 + GFF664 0.35 -0.2 347,324 + GFF664 0.35 -0.8 347,325 - GFF664 0.35 -2.2 347,333 + GFF664 0.37 -0.7 347,375 + GFF664 0.47 -1.0 347,376 - GFF664 0.47 -1.1 347,376 - GFF664 0.47 +1.5 347,376 - GFF664 0.47 +1.1 347,376 - GFF664 0.47 -0.9 347,376 - GFF664 0.47 +1.7 347,540 + GFF664 0.84 +0.1 347,540 + GFF664 0.84 -1.5 347,540 + GFF664 0.84 -0.1 347,540 + GFF664 0.84 +3.9 347,540 + GFF664 0.84 +0.7 347,540 + GFF664 0.84 +1.5 347,541 - GFF664 0.84 +0.0 347,541 - GFF664 0.84 -0.4 347,883 + GFF665 0.61 -0.1 347,883 + GFF665 0.61 +2.1 347,883 + GFF665 0.61 -1.1 347,883 + GFF665 0.61 -0.2 347,883 + GFF665 0.61 -1.4 347,883 + GFF665 0.61 -0.1 347,883 + GFF665 0.61 -0.5 347,884 - GFF665 0.61 +0.8 347,946 + GFF665 0.75 -0.3 347,946 + GFF665 0.75 +0.0 347,947 - GFF665 0.75 -0.5 347,947 - GFF665 0.75 -0.7 347,988 + GFF665 0.85 +0.2 347,989 - GFF665 0.85 -2.1 348,021 + -0.4 348,021 + -0.9 348,021 + +0.3 348,021 + +2.5 348,022 - +0.1 348,030 + +0.0 348,031 - +0.8 348,031 - +0.3 348,031 - -0.4 348,031 - +0.2 348,158 + +0.5 348,158 + -0.6 348,976 + GFF666 0.65 +1.3 348,976 + GFF666 0.65 -0.8 348,977 - GFF666 0.65 +0.5 348,977 - GFF666 0.65 +0.1 349,036 + GFF666 0.70 +1.7 349,036 + GFF666 0.70 -0.6 349,037 - GFF666 0.70 -0.9 349,037 - GFF666 0.70 -1.0
Or see this region's nucleotide sequence