Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF652 and GFF653 overlap by 4 nucleotides GFF653 and GFF654 are separated by 11 nucleotides GFF654 and GFF655 overlap by 4 nucleotides
GFF652 - Dihydroorotase (EC 3.5.2.3), at 332,741 to 334,066
GFF652
GFF653 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 334,063 to 334,800
GFF653
GFF654 - Glyoxalase family protein, at 334,812 to 335,165
GFF654
GFF655 - Sigma-54 activated regulatory protein, at 335,162 to 336,391
GFF655
Position (kb) 334
335 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 333.246 kb on - strand, within GFF652 at 333.566 kb on + strand, within GFF652 at 333.566 kb on + strand, within GFF652 at 333.567 kb on - strand, within GFF652 at 333.567 kb on - strand, within GFF652 at 334.399 kb on + strand, within GFF653 at 334.711 kb on + strand, within GFF653 at 334.798 kb on + strand at 334.846 kb on - strand at 334.846 kb on - strand at 334.846 kb on - strand at 334.846 kb on - strand at 334.846 kb on - strand at 334.890 kb on + strand, within GFF654 at 334.890 kb on + strand, within GFF654 at 334.891 kb on - strand, within GFF654 at 334.891 kb on - strand, within GFF654 at 335.019 kb on + strand, within GFF654 at 335.020 kb on - strand, within GFF654 at 335.202 kb on + strand at 335.203 kb on - strand at 335.754 kb on + strand, within GFF655 at 335.754 kb on + strand, within GFF655 at 335.754 kb on + strand, within GFF655 at 335.754 kb on + strand, within GFF655 at 335.754 kb on + strand, within GFF655 at 335.755 kb on - strand, within GFF655
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 333,246 - GFF652 0.38 +1.5 333,566 + GFF652 0.62 +0.9 333,566 + GFF652 0.62 +4.6 333,567 - GFF652 0.62 -0.4 333,567 - GFF652 0.62 +2.4 334,399 + GFF653 0.46 -1.1 334,711 + GFF653 0.88 +0.1 334,798 + -0.9 334,846 - -0.7 334,846 - -0.5 334,846 - +0.3 334,846 - +0.1 334,846 - -0.5 334,890 + GFF654 0.22 -0.4 334,890 + GFF654 0.22 +1.6 334,891 - GFF654 0.22 -0.1 334,891 - GFF654 0.22 -0.5 335,019 + GFF654 0.58 -0.3 335,020 - GFF654 0.59 -0.2 335,202 + +0.3 335,203 - +2.1 335,754 + GFF655 0.48 -0.3 335,754 + GFF655 0.48 -0.9 335,754 + GFF655 0.48 +2.1 335,754 + GFF655 0.48 -0.2 335,754 + GFF655 0.48 +0.1 335,755 - GFF655 0.48 +0.0
Or see this region's nucleotide sequence