Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF614 and GFF615 are separated by 94 nucleotides GFF615 and GFF616 overlap by 4 nucleotides GFF616 and GFF617 are separated by 74 nucleotides GFF617 and GFF618 are separated by 16 nucleotides
GFF614 - COG0012: Predicted GTPase, probable translation, at 291,482 to 291,868
GFF614
GFF615 - Transcriptional regulator, TetR family, at 291,963 to 292,700
GFF615
GFF616 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 292,697 to 294,019
GFF616
GFF617 - Putative methyltransferase associated with DUF414, at 294,094 to 294,726
GFF617
GFF618 - YaeQ protein, at 294,743 to 295,303
GFF618
Position (kb) 292
293
294
295 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 292.027 kb on + strand at 292.027 kb on + strand at 292.027 kb on + strand at 292.028 kb on - strand at 292.028 kb on - strand at 292.028 kb on - strand at 292.255 kb on + strand, within GFF615 at 292.255 kb on + strand, within GFF615 at 292.256 kb on - strand, within GFF615 at 292.256 kb on - strand, within GFF615 at 292.408 kb on + strand, within GFF615 at 292.525 kb on + strand, within GFF615 at 292.525 kb on + strand, within GFF615 at 292.526 kb on - strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.531 kb on + strand, within GFF615 at 292.532 kb on - strand, within GFF615 at 292.532 kb on - strand, within GFF615 at 292.532 kb on - strand, within GFF615 at 292.532 kb on - strand, within GFF615 at 292.755 kb on + strand at 292.756 kb on - strand at 292.756 kb on - strand at 292.756 kb on - strand at 292.818 kb on + strand at 292.819 kb on - strand at 293.043 kb on + strand, within GFF616 at 293.044 kb on - strand, within GFF616 at 293.044 kb on - strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.199 kb on + strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.200 kb on - strand, within GFF616 at 293.451 kb on + strand, within GFF616 at 293.451 kb on + strand, within GFF616 at 293.796 kb on + strand, within GFF616 at 293.865 kb on + strand, within GFF616 at 293.865 kb on + strand, within GFF616 at 293.866 kb on - strand, within GFF616 at 293.952 kb on + strand at 293.953 kb on - strand at 294.056 kb on + strand at 294.071 kb on - strand at 294.071 kb on - strand at 294.077 kb on + strand at 294.185 kb on + strand, within GFF617 at 294.186 kb on - strand, within GFF617 at 294.410 kb on + strand, within GFF617 at 294.410 kb on + strand, within GFF617 at 294.410 kb on + strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.411 kb on - strand, within GFF617 at 294.584 kb on + strand, within GFF617 at 294.662 kb on + strand, within GFF617 at 294.663 kb on - strand at 294.744 kb on + strand at 294.744 kb on + strand at 294.744 kb on + strand at 294.744 kb on + strand at 294.745 kb on - strand at 294.745 kb on - strand at 294.745 kb on - strand at 294.963 kb on + strand, within GFF618 at 294.963 kb on + strand, within GFF618 at 294.963 kb on + strand, within GFF618 at 294.963 kb on + strand, within GFF618
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 291,871 + -0.2 291,871 + -1.3 291,871 + +0.3 291,871 + +1.9 291,871 + -0.0 291,871 + +0.7 291,872 - +0.9 291,872 - +0.1 291,872 - +3.2 291,872 - +0.0 291,872 - -1.4 291,872 - +0.9 291,872 - +0.0 291,872 - -1.1 292,027 + -0.8 292,027 + -0.5 292,027 + +0.6 292,028 - +0.0 292,028 - +2.2 292,028 - -0.2 292,255 + GFF615 0.40 -1.6 292,255 + GFF615 0.40 -0.4 292,256 - GFF615 0.40 -0.1 292,256 - GFF615 0.40 +0.3 292,408 + GFF615 0.60 +0.4 292,525 + GFF615 0.76 -0.3 292,525 + GFF615 0.76 -0.1 292,526 - GFF615 0.76 +1.4 292,531 + GFF615 0.77 +0.4 292,531 + GFF615 0.77 -0.1 292,531 + GFF615 0.77 -0.6 292,531 + GFF615 0.77 -0.7 292,531 + GFF615 0.77 +0.0 292,532 - GFF615 0.77 +1.5 292,532 - GFF615 0.77 -1.2 292,532 - GFF615 0.77 -0.0 292,532 - GFF615 0.77 -0.5 292,755 + +0.9 292,756 - -0.6 292,756 - -0.1 292,756 - -0.2 292,818 + -0.8 292,819 - -0.6 293,043 + GFF616 0.26 +0.4 293,044 - GFF616 0.26 -0.5 293,044 - GFF616 0.26 -0.3 293,199 + GFF616 0.38 +2.4 293,199 + GFF616 0.38 +0.4 293,199 + GFF616 0.38 -0.3 293,199 + GFF616 0.38 -1.0 293,200 - GFF616 0.38 +3.4 293,200 - GFF616 0.38 +0.8 293,200 - GFF616 0.38 -0.6 293,200 - GFF616 0.38 +1.1 293,200 - GFF616 0.38 -0.5 293,200 - GFF616 0.38 -0.8 293,451 + GFF616 0.57 -0.7 293,451 + GFF616 0.57 +1.1 293,796 + GFF616 0.83 +0.9 293,865 + GFF616 0.88 +1.8 293,865 + GFF616 0.88 +0.7 293,866 - GFF616 0.88 -0.2 293,952 + +0.8 293,953 - -1.2 294,056 + -0.0 294,071 - +0.2 294,071 - -0.2 294,077 + +0.9 294,185 + GFF617 0.14 +3.8 294,186 - GFF617 0.15 -0.4 294,410 + GFF617 0.50 -1.2 294,410 + GFF617 0.50 +0.1 294,410 + GFF617 0.50 -0.3 294,411 - GFF617 0.50 +0.8 294,411 - GFF617 0.50 +0.4 294,411 - GFF617 0.50 +0.7 294,411 - GFF617 0.50 +0.1 294,411 - GFF617 0.50 +1.7 294,584 + GFF617 0.77 -0.5 294,662 + GFF617 0.90 -1.6 294,663 - +1.6 294,744 + +0.0 294,744 + -0.6 294,744 + -0.5 294,744 + -0.2 294,745 - -0.9 294,745 - -0.5 294,745 - -0.0 294,963 + GFF618 0.39 +0.3 294,963 + GFF618 0.39 -0.5 294,963 + GFF618 0.39 +0.1 294,963 + GFF618 0.39 -0.2
Or see this region's nucleotide sequence