Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5710

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,733,923	+		GFF5709	0.76	-0.2
2,733,923	+		GFF5709	0.76	+0.5
2,733,924	-		GFF5709	0.76	+0.2
2,734,074	-		GFF5709	0.86	-0.0
2,734,074	-		GFF5709	0.86	-0.4
2,734,079	+		GFF5709	0.87	-0.8
2,734,238	+				-1.1
2,734,239	-				-0.6
2,734,239	-				-0.8
2,734,253	+				-0.6
2,734,253	+				+0.7
2,734,253	+				+0.0
2,734,253	+				-0.4
2,734,253	+				-1.5
2,734,254	-				-1.4
2,734,254	-				+0.4
2,734,292	-				-0.6
2,734,483	+		GFF5710	0.48	+0.3
2,734,483	+		GFF5710	0.48	-0.7
2,734,483	+		GFF5710	0.48	+0.2
2,734,484	-		GFF5710	0.48	-0.4
2,734,484	-		GFF5710	0.48	-0.9
2,734,484	-		GFF5710	0.48	-0.6
2,734,484	-		GFF5710	0.48	+0.2
2,734,759	-				-0.4
2,734,759	-				-1.5
2,734,766	+				-0.4
2,734,766	+				-0.4
2,734,767	-				-0.7
2,734,767	-				+0.9
2,734,768	+				-0.5
2,734,768	+				+1.7
2,734,769	-				-0.6
2,734,769	-				+1.0
2,734,769	-				+1.4
2,734,947	-				-0.5
2,734,947	-				+0.4
2,734,952	+				+0.9
2,734,952	+				-0.5
2,734,953	-				-0.8
2,734,953	-				+0.8
2,735,174	-		GFF5711	0.41	-0.8
2,735,182	-		GFF5711	0.43	+1.8
2,735,447	+				+2.1
2,735,448	-				-0.2