Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5597

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,611,198	+		GFF5595	0.49	+0.1
2,611,199	-		GFF5595	0.49	+0.4
2,611,228	+		GFF5595	0.52	-1.2
2,611,228	+		GFF5595	0.52	-0.5
2,611,228	+		GFF5595	0.52	+0.2
2,611,228	+		GFF5595	0.52	-0.0
2,611,229	-		GFF5595	0.52	-0.6
2,611,229	-		GFF5595	0.52	+0.2
2,611,229	-		GFF5595	0.52	+0.4
2,611,229	-		GFF5595	0.52	+0.1
2,611,276	+		GFF5595	0.58	-1.1
2,611,276	+		GFF5595	0.58	+0.2
2,611,277	-		GFF5595	0.58	-0.1
2,612,080	+				+1.8
2,612,081	-				+0.2
2,612,339	+		GFF5597	0.12	+0.1
2,612,357	+		GFF5597	0.13	+0.2
2,612,855	+		GFF5597	0.36	-0.6
2,612,856	-		GFF5597	0.36	-0.8
2,612,856	-		GFF5597	0.36	+0.3
2,612,856	-		GFF5597	0.36	+0.8
2,613,017	+		GFF5597	0.43	-1.0
2,613,018	-		GFF5597	0.43	+0.8
2,613,018	-		GFF5597	0.43	-1.6
2,613,018	-		GFF5597	0.43	-0.9
2,613,113	+		GFF5597	0.48	+0.1
2,613,215	+		GFF5597	0.52	+0.6
2,613,216	-		GFF5597	0.52	+0.2
2,613,242	+		GFF5597	0.54	-0.8
2,613,243	-		GFF5597	0.54	-1.4
2,613,248	+		GFF5597	0.54	-0.4
2,613,323	+		GFF5597	0.57	-1.6
2,613,323	+		GFF5597	0.57	+0.1
2,613,324	-		GFF5597	0.58	+0.1
2,613,324	-		GFF5597	0.58	+0.2
2,613,324	-		GFF5597	0.58	+0.0
2,613,426	-		GFF5597	0.62	-0.2
2,613,549	-		GFF5597	0.68	-0.7
2,613,549	-		GFF5597	0.68	+1.2
2,613,549	-		GFF5597	0.68	+0.4
2,613,549	-		GFF5597	0.68	+0.3
2,613,864	-		GFF5597	0.83	+1.9
2,613,864	-		GFF5597	0.83	-0.2
2,614,377	-				-0.5