Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5514

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,514,309	+				-0.4
2,514,310	-				+0.2
2,514,693	+		GFF5513	0.58	+1.3
2,514,693	+		GFF5513	0.58	-0.7
2,514,693	+		GFF5513	0.58	+0.1
2,514,693	+		GFF5513	0.58	+0.1
2,514,694	-		GFF5513	0.58	-1.1
2,514,694	-		GFF5513	0.58	+0.2
2,514,930	+				+1.2
2,514,930	+				-0.8
2,514,931	-				-0.3
2,514,931	-				-0.5
2,514,931	-				-1.6
2,515,024	+				-1.0
2,515,025	-				-0.5
2,515,068	-				-0.5
2,515,114	+				-0.3
2,515,273	+				+0.1
2,515,324	+				-0.8
2,515,606	+		GFF5514	0.21	+0.4
2,515,606	+		GFF5514	0.21	+0.0
2,515,606	+		GFF5514	0.21	+0.4
2,515,606	+		GFF5514	0.21	-0.5
2,515,606	+		GFF5514	0.21	-0.8
2,515,607	-		GFF5514	0.21	-0.8
2,515,607	-		GFF5514	0.21	-0.2
2,515,607	-		GFF5514	0.21	-0.5
2,515,607	-		GFF5514	0.21	+0.7
2,515,607	-		GFF5514	0.21	+0.5
2,515,666	+		GFF5514	0.23	-0.4
2,515,666	+		GFF5514	0.23	+0.2
2,515,738	+		GFF5514	0.26	+0.3
2,515,738	+		GFF5514	0.26	+0.9
2,515,739	-		GFF5514	0.26	+0.3
2,515,741	+		GFF5514	0.26	-1.2
2,515,741	+		GFF5514	0.26	+1.1
2,515,741	+		GFF5514	0.26	+0.5
2,515,742	-		GFF5514	0.27	-0.6
2,515,742	-		GFF5514	0.27	+0.5
2,515,957	+		GFF5514	0.36	-0.2
2,515,958	-		GFF5514	0.36	-1.8
2,516,235	+		GFF5514	0.48	-1.4
2,516,536	+		GFF5514	0.61	-1.0
2,516,536	+		GFF5514	0.61	-1.2
2,516,537	-		GFF5514	0.61	-0.8
2,516,836	+		GFF5514	0.74	-0.0
2,516,837	-		GFF5514	0.74	-0.1
2,516,980	+		GFF5514	0.80	+0.3
2,516,980	+		GFF5514	0.80	+0.0
2,516,981	-		GFF5514	0.80	-0.1
2,516,981	-		GFF5514	0.80	-0.8
2,517,064	+		GFF5514	0.83	-0.0
2,517,065	-		GFF5514	0.84	+1.1
2,517,220	+				+0.6
2,517,220	+				+0.3
2,517,221	-				-1.0
2,517,221	-				+0.2
2,517,221	-				+1.8
2,517,307	+				-1.0
2,517,367	+				-0.3
2,517,367	+				-1.1
2,517,368	-				-0.3
2,517,368	-				+1.8
2,517,368	-				-1.4
2,517,368	-				+0.1
2,517,468	+				-1.4
2,517,468	+				-0.4
2,517,468	+				+0.2
2,517,469	-				-0.5
2,517,502	+				+0.1
2,517,502	+				+0.6
2,517,502	+				-1.0
2,517,503	-				-1.4
2,517,503	-				+0.2
2,517,503	-				+0.7
2,517,503	-				-1.2
2,517,503	-				-0.5
2,517,503	-				+0.2
2,517,503	-				+0.8
2,517,970	+		GFF5515	0.53	-0.4
2,517,971	-		GFF5515	0.53	-0.4
2,518,273	+				-0.2
2,518,273	+				+1.0
2,518,273	+				-1.1
2,518,273	+				-0.7
2,518,273	+				+3.4
2,518,274	-				+0.6
2,518,274	-				-1.3
2,518,274	-				-0.3
2,518,274	-				-0.5
2,518,375	+				-0.2
2,518,375	-				+2.2